RNA id: TU862371


Basic Information

Item Value
RNA id TU862371
length 413
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G758962
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87928327 ~ 87933847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCCGAGGCGCAGAGCGCCTTGTTGCAGGCGCTGGTCTGAGACGGTTCTGATAGgacgatgaggaggaggaggagggcagcgGAGGCTGGAACCAGAACATACAGCTGACCAGGCCTCATCCTGACAGTCAGCTAGTAggctggacacacacacctggtggTCCGGTTGtctccacacacacagcaacacactgtCTGTCCACCGTTACAATGGTTCGAATCCTTCCGTTTGATTGACGGCTGTACCCCCTTTAAATCCAACACCGCCGCTTTCCTCACAAGGTCCAGGATGAAACTATGCCGTCTATAATAACCGTGCAGTCGGAGGGCGTCAGTTTCTCAGCCACAACGCCGCAGACAGTCGGGCGCCTTACAGATACCGCGTCCGTTTTAACATGATCCAGGAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862369 lncRNA upstream 542 87925763 ~ 87927785 (+) True G758961
TU862336 lncRNA upstream 20674 87906777 ~ 87907653 (+) True G758935
TU862320 lncRNA upstream 41231 87885202 ~ 87887096 (+) False G758926
TU862322 lncRNA upstream 41637 87885202 ~ 87886690 (+) True G758926
TU862319 lncRNA upstream 49542 87877943 ~ 87878785 (+) True G758925
TU862374 lncRNA downstream 3344 87937191 ~ 87982296 (+) False G758965
TU862375 lncRNA downstream 3344 87937191 ~ 87939675 (+) True G758965
TU862377 lncRNA downstream 6272 87940119 ~ 87940447 (+) True G758967
TU862379 lncRNA downstream 7063 87940910 ~ 87942461 (+) True G758968
TU862381 lncRNA downstream 9276 87943123 ~ 87944229 (+) True G758969
XM_036986650.1 mRNA upstream 152880 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 236584 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 236584 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 257223 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 83373 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 83380 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 83609 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 92937 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 691594 88625441 ~ 88642762 (+) True LOC110510807
TU862276 other upstream 51643 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 195188 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 210609 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 994316 86933446 ~ 86934011 (+) True G758259
TU861391 other upstream 1007818 86912176 ~ 86920509 (+) True ly97.3
TU862389 other downstream 31845 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 58123 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 148174 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 148174 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 175159 88109006 ~ 88110300 (+) True G759031

Expression Profile