RNA id: TU862374


Basic Information

Item Value
RNA id TU862374
length 1448
lncRNA type read_through
GC content 0.40
exon number 2
gene id G758965
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87937191 ~ 87982296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgtttttcttactttttcttttaatatatatattttaggtattttcttaaaactgcattgatggttaagggcttgtaagtaagcatttcactgtaaggtctaccacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctacctacacctgttgtattcagcatttcactgtaaggtctacctacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcagttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttccctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaagatctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcagttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttccctgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattccgcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactataaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862371 lncRNA upstream 3344 87928327 ~ 87933847 (+) True G758962
TU862369 lncRNA upstream 9406 87925763 ~ 87927785 (+) True G758961
TU862336 lncRNA upstream 29538 87906777 ~ 87907653 (+) True G758935
TU862320 lncRNA upstream 50095 87885202 ~ 87887096 (+) False G758926
TU862322 lncRNA upstream 50501 87885202 ~ 87886690 (+) True G758926
TU862405 lncRNA downstream 14947 87997243 ~ 87998848 (+) True G758989
TU862362 lncRNA downstream 19250 88001546 ~ 88010619 (+) True G758954
TU862416 lncRNA downstream 37837 88020133 ~ 88021560 (+) False G758999
TU862415 lncRNA downstream 38424 88020720 ~ 88021560 (+) True G758999
TU862422 lncRNA downstream 51332 88033628 ~ 88034819 (+) True G759005
XM_036986650.1 mRNA upstream 161744 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 245448 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 245448 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 266087 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 34924 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 34931 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 35160 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 44488 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 643145 88625441 ~ 88642762 (+) True LOC110510807
TU862276 other upstream 60507 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 204052 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 219473 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 1003180 86933446 ~ 86934011 (+) True G758259
TU861391 other upstream 1016682 86912176 ~ 86920509 (+) True ly97.3
TU862403 other downstream 9674 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 99725 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 99725 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 126710 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 715678 88697974 ~ 88701419 (+) False G759556

Expression Profile