RNA id: TU862381


Basic Information

Item Value
RNA id TU862381
length 1060
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G758969
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87943123 ~ 87944229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCCTTAGCGAAGGAGCCAACTACGAAATAATAGTTACGTGCTTGACTAACACCATACAATTTCGGGAAATGTTTTCATgccgtttttttccctcatccatCAGTGATATCAACAGACCAAGTGGAGAGCTGCCATCTTGCTGGAGGGGGGAAAGCTAAAAATCTGTTCTATTCGCCCAAGTCCCCTGATTGGCTCAGCTCCAACGTCAGACAGTCGAGTCAACAAAAAAACCACACTAATTCTGCCAACTAGAAGCCTGTTCATATGTATTTTAAGGTTGTTTTTCATACCAGAGTACTTTGGACTATGTTACGCAAACTGCACGCAGGTTGGGAGGTCTGCAATACTTTTTGACAAGAGCCtgcatagggccctggtctaaagtagttcactatatagggaatagggttccatagggctctggtctaaagtagttcactatatagggaatagggttagggccctggtctaaagtagttcactatatagggaatagggttccatagggctctggtctaaagtagtgcactacatagggaatagggttagggccctggtctaaagtagtgcactacatagggaatagggttccattgggctctggtctaaagcagtgcactatatagggaaacggGTACCATTTTAGACACAAACTTTGTTTGTGAAAGGACAGAACAAAACGAAAGGGAAAGATCTGAGTGACTTCAGTTAAACCTCCATCACAACAGTCCACGGTAGAAGCTTCTTCTGGGATCAGGAAATAAGAGCTACAAACGGCAACAGCATGCACAGCATCCAAATCACCAGTCAAAGACATAACACGTTGATGTTGGTTGCGTGGATCCAACTCCAGATGGGAataaaaagcaaaaaaaaacaaaacaaaaatgatagAACCAAAAAAGGAACAACAGAATCTGACCCCGACATTCTCAAAGAGTTACGCCAACAACATTGATTtcaacaacagtaacaacaacaaggaccttgacagagagaaagacggacTCGATACAAAATTTAAAATAAACGTCGGTCCATTAAAACAGACGAAaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862379 lncRNA upstream 662 87940910 ~ 87942461 (+) True G758968
TU862377 lncRNA upstream 2676 87940119 ~ 87940447 (+) True G758967
TU862375 lncRNA upstream 3448 87937191 ~ 87939675 (+) True G758965
TU862371 lncRNA upstream 9276 87928327 ~ 87933847 (+) True G758962
TU862369 lncRNA upstream 15338 87925763 ~ 87927785 (+) True G758961
TU862386 lncRNA downstream 13677 87957906 ~ 87958399 (+) True G758974
TU862390 lncRNA downstream 15294 87959523 ~ 87965925 (+) False G758976
TU862405 lncRNA downstream 53014 87997243 ~ 87998848 (+) True G758989
TU862362 lncRNA downstream 57317 88001546 ~ 88010619 (+) True G758954
TU862416 lncRNA downstream 75904 88020133 ~ 88021560 (+) False G758999
XM_036986650.1 mRNA upstream 167676 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 251380 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 251380 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 272019 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 72991 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 72998 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 73227 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 82555 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 681212 88625441 ~ 88642762 (+) True LOC110510807
TU862276 other upstream 66439 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 209984 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 225405 87716817 ~ 87717718 (+) True G758531
TU861418 other upstream 1009112 86933446 ~ 86934011 (+) True G758259
TU861391 other upstream 1022614 86912176 ~ 86920509 (+) True ly97.3
TU862389 other downstream 21463 87965692 ~ 87971929 (+) True G758976
TU862403 other downstream 47741 87991970 ~ 87995145 (+) True G758988
TU862451 other downstream 137792 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 137792 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 164777 88109006 ~ 88110300 (+) True G759031

Expression Profile