RNA id: TU862362



Basic Information


Item Value
RNA id TU862362
length 731
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G758954
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88001546 ~ 88010619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGTGGGAATGTTCTCGAACATGTCGGATGAAGAAGTAACACAAGCAGTTTGTTCTGGAGGGCCTCCAGGATGCTGTCGGAGTCGCAAAGCATGCAGGGAGTTGTAGTGCAGATCTGGATGTGGTACTTGCCCACCGGCTGCCTCAGGAACATGGTGTAGAACGTCGCTACCTCATAGATCCTCATCGGAGGGACCTCAAGCACCTCGGCCAcctgggagaagagaggaaaatgtatgtttaaaattattattttttaaataaatggagGCTCATTAAGAAAAAAAGGTGTAGCATTGACTGAAGTATAATCAGTCCAGTAATGGATGATGGAGTCGGTTTCTAAATGGCTCGTCCCTACTGATCACGCCCCTGGTCTGCAAATAGAGATTCTACGTAATTCTGTGGTTCAACAAATCTACATCAGCACATCACTCATTCATTCTGATTATGCCTATTTTAAAAATATGTTGCCACAAAAGCAAACCAGATTAACATACTCTATTCTGAAGCAAACAGATGCCTCAGTCGGCATATTGTTCATGGCTGAGATGGggatattgattgattgattgattgatttacctTGTTCATGGCTGAGATGGGGAGCCATCCATGCTGTCTCTGAGCCAGGTCCAACACAGGGATGGTGGCGGCCTGCTTGTGGCCCTCTGGGTACATACTAATGATAGCATCAATCCTCTTAAAACAACAAACGGCTTTCATTAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU862405 lncRNA upstream 2698 87997243 ~ 87998848 (+) True G758989
TU862374 lncRNA upstream 19250 87937191 ~ 87982296 (+) False G758965
TU862390 lncRNA upstream 35621 87959523 ~ 87965925 (+) False G758976
TU862386 lncRNA upstream 43147 87957906 ~ 87958399 (+) True G758974
TU862381 lncRNA upstream 57317 87943123 ~ 87944229 (+) True G758969
TU862416 lncRNA downstream 9514 88020133 ~ 88021560 (+) False G758999
TU862415 lncRNA downstream 10101 88020720 ~ 88021560 (+) True G758999
TU862422 lncRNA downstream 23009 88033628 ~ 88034819 (+) True G759005
TU862431 lncRNA downstream 44472 88055091 ~ 88055551 (+) False G759013
TU862432 lncRNA downstream 44472 88055091 ~ 88057085 (+) False G759013
XM_036986650.1 mRNA upstream 226099 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 309803 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 309803 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 330442 87569072 ~ 87671104 (+) False LOC110512128
XM_036986662.1 mRNA downstream 6601 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA downstream 6608 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA downstream 6837 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA downstream 16165 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 614822 88625441 ~ 88642762 (+) True LOC110510807
TU862403 other upstream 6401 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 29617 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 124862 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 268407 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 283828 87716817 ~ 87717718 (+) True G758531
TU862451 other downstream 71402 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 71402 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 98387 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 687355 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 687355 88697974 ~ 88701075 (+) False G759556

Expression Profile