RNA id: TU862416


Basic Information

Item Value
RNA id TU862416
length 332
lncRNA type intronic
GC content 0.53
exon number 3
gene id G758999
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88020133 ~ 88021560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGTGGAGCAGGATCAACAACGTGAGATGAGGACTAGAAGTCAGGGCCAGCAAGGTGGAGCTGGATCAACAACGTGAGATGAGGAATAGAAGTCGGGGCCAGCAAGGTGGAGCTGGATCAACAACGTGAGATGAGGACTAGAAGTCGGGGCCAGCAAGGTGGAGCTGGATCAACAACGTGAGATGAGGACTAGAAGTCGGGGCCAGCAAGGTGGAGCAGGATCAACAACGTGAGATGAGGACTACACAAGGTGGAGCAGGATCAACAACGTGAGATGAGGACTACACAAGGTGGAGCTGGATCAACAACGTGAGATGAGGACTAGAAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862362 lncRNA upstream 9514 88001546 ~ 88010619 (+) True G758954
TU862405 lncRNA upstream 21285 87997243 ~ 87998848 (+) True G758989
TU862390 lncRNA upstream 54208 87959523 ~ 87965925 (+) False G758976
TU862386 lncRNA upstream 61734 87957906 ~ 87958399 (+) True G758974
TU862381 lncRNA upstream 75904 87943123 ~ 87944229 (+) True G758969
TU862422 lncRNA downstream 12068 88033628 ~ 88034819 (+) True G759005
TU862431 lncRNA downstream 33531 88055091 ~ 88055551 (+) False G759013
TU862432 lncRNA downstream 33531 88055091 ~ 88057085 (+) False G759013
TU862433 lncRNA downstream 33531 88055091 ~ 88057598 (+) True G759013
TU862434 lncRNA downstream 34064 88055624 ~ 88055972 (+) True G759014
XM_036986650.1 mRNA upstream 244686 87745792 ~ 87775447 (+) True LOC110513441
XM_036986648.1 mRNA upstream 328390 87687931 ~ 87691743 (+) False LOC110512127
XM_036986649.1 mRNA upstream 328390 87687941 ~ 87691743 (+) False LOC110512127
XM_036986643.1 mRNA upstream 349029 87569072 ~ 87671104 (+) False LOC110512128
XM_036986660.1 mRNA downstream 5224 88026784 ~ 88059703 (+) True acss2l
XM_036986671.1 mRNA downstream 603881 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 624840 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 624842 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 624842 88646402 ~ 88667320 (+) False LOC110510805
TU862403 other upstream 24988 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 48204 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 143449 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 286994 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 302415 87716817 ~ 87717718 (+) True G758531
TU862451 other downstream 60461 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 60461 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 87446 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 676414 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 676414 88697974 ~ 88701075 (+) False G759556

Expression Profile