RNA id: TU862439


Basic Information

Item Value
RNA id TU862439
length 358
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G759017
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88077240 ~ 88077597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggGTAGTAGGGAATCCGGAATGAGGCTGAGGGCAAGGAGATTAGGAAGCAGGTCTGGAGAAGAATCCTATGAAGCAGTAGAGCAGGGATCCAGGCCAGGGAAGCAGGACTGAGGAGACGAGGGACTGGAGACAGGTCCCGGAGTCAGAGCAGGCGGGACTGTAGCGGAGAGAAAAAGCAGCGTGAGGCTAGGAACAAGCAGCTAGAAATACGGACTGACTGAGTAGAGGCTACTatctggcagcgtggaagtggcatggctgagtatttgtagaggtcttgattatggaacaggttgcagctggtgggaaTTGGTTACCACAGGGTTACCTCAGGGTTACCAGGGTTACCTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862438 lncRNA upstream 5149 88071829 ~ 88072091 (+) True G759016
TU862433 lncRNA upstream 19642 88055091 ~ 88057598 (+) True G759013
TU862435 lncRNA upstream 20017 88056003 ~ 88057223 (+) True G759015
TU862432 lncRNA upstream 20155 88055091 ~ 88057085 (+) False G759013
TU862434 lncRNA upstream 21268 88055624 ~ 88055972 (+) True G759014
TU862443 lncRNA downstream 485 88078082 ~ 88080468 (+) False G759018
TU862442 lncRNA downstream 1133 88078730 ~ 88080468 (+) False G759018
TU862445 lncRNA downstream 1133 88078730 ~ 88080468 (+) True G759018
TU862446 lncRNA downstream 3383 88080980 ~ 88081390 (+) False G759019
TU862447 lncRNA downstream 3383 88080980 ~ 88081831 (+) True G759019
XM_036986662.1 mRNA upstream 17537 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 17537 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 17537 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 17537 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 301793 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 547844 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 568803 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 568805 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 568805 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 568806 88646403 ~ 88667320 (+) True LOC110510805
TU862403 other upstream 82095 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 105311 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 200556 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 344101 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 359522 87716817 ~ 87717718 (+) True G758531
TU862451 other downstream 4424 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 4424 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 31409 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 620377 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 620377 88697974 ~ 88701075 (+) False G759556

Expression Profile