RNA id: TU862442


Basic Information

Item Value
RNA id TU862442
length 1653
lncRNA type intronic
GC content 0.39
exon number 2
gene id G759018
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88078082 ~ 88080468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGACTTTACATCCTTACACTTTTTGGACCTTTGATTTAAAACattcatttttttcccccacattcTTGCTTTTTCTTCTTTAAAAGAAAAACATGTAATTATATTTACCTCATAGTAACAACTGTACAAGGACAGTATAGTAGTACAATCATCTACTTAAACATGGTCCTTACTTTAAATTAAGTGACAACAAAATGACAGTTGAAGATAGCTCACCGTGGTTCTTTTCGATCGCGGGTTTGGACGATGAGCAATTTAAAGTTTATTTTTATTAAGTCTCTGCAAAACATGACCTTTTAAAACGTTACGGACAAAGATCGGAGTAAATCCCGGtcctttagggctctattcagtctgtaaaAGGTGTAACACATTCCGCGATATAAATGTAAAGGCTGGGCCGACATACGCAGCACTTATCCCGGGGAATGTCTGTTAAATCTCCGTTAAAGCgggaaacatttacatttcaatcacgctgtaaagcTGAAGTTGCGCGATGcgggattgaatagagccccttAGCCGGGTGTTTACATCCCAGCGGCATGACAGAGCACAGTGACAGCAGTAGCTTGTATGTACATGCACTAAAGTGCTACAGTGTTTGTTTTTTACAAAGGCATGCAGAGCAAATacgactgcatcccaaatggcaccctattcactacatagtgcactactttagaccagagccctatagaaccctatatatagtgcactactttagaccagagccctatagaaccctatatagtgcactactttagaccagagtcctatgggaccctattccctatatagtgcactactttagaccagagtcctatgtggccctattccctattatagtgcactactttagaccagagtcctatggggccatattccctatatagtgcactactttagaccagagccctatggggccctattccctacatagtgcactactttaggccagagtcctatggggccctattccctatatagtgcactactttagaccagagccctatggtgaatgcattcagttgtacaactgaccaggtacccccccccctccctatgtgaataggatgccatttgggatagcCGCCTATGTGACTGATATTTGTTATACAACTTCCTCCCACGTATGCATAAGGGTTATTCAGTTGctatcttccctctcttcttctacaCGTTTACAGAGTTGAACATTCATTTCAACATATAGAAATACATTACATGAGCATCGTAACTGACATCATGGATTCACCTGCCTCGGCCAACAGGAAGcagtaattttttttaaacatttttgttgttgttgttgttgtctcaacatttgtttatttgtttattctaCAAATACACGTGAGTAGTCTGACTTCAAGCTTCAAAGGAACCAACAGTAACATAAGATATGTTCAACTGAATAAGAAAATAGGTTAAGAGTATTTACACACAGATTATAACAAATTATATGTAAATAtgcaaaataaacaaaaacataaaccGACAGAAAATGTGTTCtttatgtttatgtttatgttCCGGTATTATAATAACGGTTTTTCTCTCgacaaaaaatgtgtttgtaTGTATTATATGActcatatatacatacagtaccagtcaaaagtttggacacacctactcattcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862439 lncRNA upstream 1133 88077240 ~ 88077597 (+) True G759017
TU862438 lncRNA upstream 6639 88071829 ~ 88072091 (+) True G759016
TU862433 lncRNA upstream 21132 88055091 ~ 88057598 (+) True G759013
TU862446 lncRNA downstream 512 88080980 ~ 88081390 (+) False G759019
TU862447 lncRNA downstream 512 88080980 ~ 88081831 (+) True G759019
TU862452 lncRNA downstream 1553 88082021 ~ 88087807 (+) False G759020
TU862502 lncRNA downstream 88596 88169064 ~ 88175409 (+) True G759055
TU862522 lncRNA downstream 141087 88221555 ~ 88224684 (+) True G759064
XM_036986662.1 mRNA upstream 19027 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 19027 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 19027 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 19027 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 303283 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 544973 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 565932 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 565934 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 565934 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 565935 88646403 ~ 88667320 (+) True LOC110510805
TU862403 other upstream 83585 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 106801 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 202046 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 345591 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 361012 87716817 ~ 87717718 (+) True G758531
TU862451 other downstream 1553 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 1553 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 28538 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 617506 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 617506 88697974 ~ 88701075 (+) False G759556

Expression Profile