RNA id: TU862758


Basic Information

Item Value
RNA id TU862758
length 1393
lncRNA type intronic
GC content 0.37
exon number 2
gene id G759243
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88078702 ~ 88080458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggtgtgtccaaacttttgactggtactgtatgtatatatgagTCATATAATACAtacaaacacattttttgtcGAGAGAAAAACCGTTATTATAATACCGGaacataaacataaacataaaGAACACATTTTCTGTCggtttatgtttttgtttattttgcaTATTTACATATAATTTGTTATAATCTGTGTGTAAATACTCTTAACCTATTTTCTTATTCAGTTGAACATATCTTATGTTACTGTTGGTTCCTTTGAAGCTTGAAGTCAGACTACTCACGTGTATTTGtagaataaacaaataaacaaatgttgagacaacaacaacaacaacaaaaatgtttaaaaaaaattactgCTTCCTGTTGGCCGAGGCAGGTGAATCCATGATGTCAGTTACGATGCTCATGTAATGTATTTCTATATGTTGAAATGAATGTTCAACTCTGTAAACGtgtagaagaagagagggaagatagCAACTGAATAACCCTTATGCATACGTGGGAGGAAGTTGTATAACAAATATCAGTCACATAGGCGgctatcccaaatggcatcctattcacatagggaggggggggggtacctggtcagttgtacaactgaatgcattcaccatagggctctggtctaaagtagtgcactatatagggttctatagggctctggtctaaagtagtgcactatgtagtgaatagggtgccatttgggatgcagtcgtATTTGCTCTGCATGCCTTTGTAAAAAACAAACACTGTAGCACTTTAGTGCATGTACATACAAGCTACTGCTGTCACTGTGCTCTGTCATGCCGCTGGGATGTAAACACCCGGCTaaggggctctattcaatcccgCATCGCGCAACTTCAgctttacagcgtgattgaaatgtaaatgtttcccGCTTTAACGGAGATTTAACAGACATTCCCCGGGATAAGTGCTGCGTATGTCGGCCCAGCCTTTACATTTATATCGCGGAATGTGTTACACCTtttacagactgaatagagccctaaaggaCCGGGATTTACTCCGATCTTTGTCCGTAACGTTTTAAAAGGTCATGTTTTGCAGAGACTTAATAAAAATAAACTTTAAATTGCTCATCGTCCAAACCCGCGATCGAAAAGAACCACGGTGAGCTATCTTCAACTGTCATTTTGTTGTCACTTAATTTAAAGTAAGGACCATGTTTAAGTAGATGATTGTACTACTATACTGTCCTTGTACAGTTGTTACTATGAGGTAAATATAATTACATGTTTTTCTTTTAAAGAAGAAAAAGCAAgaatgtgggggaaaaaaatgaatGTTTTAAATCAAAGGTCCAAAAAGTGTAAGGATGTAAAGTCAGATGAATTGGTAATAAACATGAATGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862754 lncRNA downstream 1720 88076763 ~ 88076982 (-) True G759242
TU862737 lncRNA downstream 14051 88060693 ~ 88064651 (-) True G759225
TU862719 lncRNA downstream 95590 87982166 ~ 87983112 (-) True G759209
TU862690 lncRNA downstream 165272 87910408 ~ 87913430 (-) True G759184
TU862689 lncRNA downstream 170372 87906440 ~ 87908330 (-) False G759184
TU862762 lncRNA upstream 522 88080980 ~ 88081384 (-) False G759246
TU862763 lncRNA upstream 552 88081010 ~ 88081384 (-) True G759246
TU862764 lncRNA upstream 7380 88087838 ~ 88088611 (-) True G759247
TU862769 lncRNA upstream 10700 88091158 ~ 88091718 (-) False G759249
TU862768 lncRNA upstream 11667 88092125 ~ 88094154 (-) True G759249
XM_021614144.2 mRNA downstream 61599 88002853 ~ 88017103 (-) True LOC110530857
XM_021614143.2 mRNA downstream 61603 88002853 ~ 88017099 (-) False LOC110530857
XM_036986656.1 mRNA downstream 77582 87944259 ~ 88001120 (-) False LOC110531046
XM_036986665.1 mRNA upstream 5450 88085908 ~ 88331494 (-) False LOC110518901
XM_036986663.1 mRNA upstream 5450 88085908 ~ 88331495 (-) False LOC110518901
XM_036986667.1 mRNA upstream 5818 88086276 ~ 88331495 (-) False LOC110518901
XM_036986669.1 mRNA upstream 5824 88086282 ~ 88331495 (-) False LOC110518901
XM_036986666.1 mRNA upstream 5826 88086284 ~ 88331495 (-) True LOC110518901
TU862683 other downstream 135880 87940904 ~ 87942822 (-) True LOC110530858
TU860865 other downstream 1846510 86230374 ~ 86232192 (-) False G757788
TU860867 other downstream 1846510 86230374 ~ 86232192 (-) False G757788
TU860868 other downstream 1846510 86230374 ~ 86232192 (-) False G757788
TU860438 other downstream 2214815 85863011 ~ 85863887 (-) True G757422
TU863003 other upstream 350746 88431204 ~ 88443468 (-) False G759421
TU863742 other upstream 455182 88535640 ~ 88536047 (-) True G759982
TU863763 other upstream 583146 88663604 ~ 88665140 (-) False G759998
TU863860 other upstream 622533 88702991 ~ 88704054 (-) True G760051
TU863910 other upstream 747526 88827984 ~ 88830811 (-) False LOC110530888

Expression Profile