RNA id: TU862446


Basic Information

Item Value
RNA id TU862446
length 411
lncRNA type intronic
GC content 0.46
exon number 1
gene id G759019
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88080980 ~ 88081831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaattctaaataaataattgacaatgtcaccagcaaagcacccccacaccatcacacctcctcctccatgcttcacggtggtaaccacacatgcagagatcatccgttcaactactctgcgtctcacaaagacacggcggttggacagatttccaccggtctaaagtccattgctcgtgtttcttggcccaagcaagtctcctcttcttattggtgtcctttagcaatggtttctttgcagcaattcgaccacgaaggcctgattcacgcagtctcctctgaacagttgatgttgagatgtgtctgttaactgaactctgtgaagcatttatttggacagcaatctgaggtgcagtgctttgctggtgacactgtctgtgatttaattAGAACTCAAggcactcttaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862443 lncRNA upstream 512 88078082 ~ 88080468 (+) False G759018
TU862442 lncRNA upstream 512 88078730 ~ 88080468 (+) False G759018
TU862445 lncRNA upstream 512 88078730 ~ 88080468 (+) True G759018
TU862439 lncRNA upstream 3383 88077240 ~ 88077597 (+) True G759017
TU862438 lncRNA upstream 8889 88071829 ~ 88072091 (+) True G759016
TU862452 lncRNA downstream 631 88082021 ~ 88087807 (+) False G759020
TU862502 lncRNA downstream 87674 88169064 ~ 88175409 (+) True G759055
TU862522 lncRNA downstream 140165 88221555 ~ 88224684 (+) True G759064
TU862545 lncRNA downstream 169901 88251291 ~ 88251637 (+) True G759080
TU862550 lncRNA downstream 182563 88263953 ~ 88264693 (+) True G759085
XM_036986662.1 mRNA upstream 21277 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 21277 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 21277 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 21277 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 305533 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 544051 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 565010 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 565012 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 565012 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 565013 88646403 ~ 88667320 (+) True LOC110510805
TU862403 other upstream 85835 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 109051 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 204296 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 347841 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 363262 87716817 ~ 87717718 (+) True G758531
TU862451 other downstream 631 88082021 ~ 88106947 (+) False G759020
TU862454 other downstream 631 88082021 ~ 88106947 (+) True G759020
TU862468 other downstream 27616 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 616584 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 616584 88697974 ~ 88701075 (+) False G759556

Expression Profile