RNA id: TU862452


Basic Information

Item Value
RNA id TU862452
length 3461
lncRNA type antisense_over
GC content 0.54
exon number 7
gene id G759020
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88082021 ~ 88106947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtattgcatacatatatatacacatgtggaACTATGAGTAAATCAAGTAGAGGCACATCTGACGGTAATGTTTGGATGATGTCATTGTTTTGTTGTTACAGTACTATCCAGGTTCTTTTCATTCCGGAGTTGAAAGTTTTCAGTTCCAGTACTTTTGAGTTCCTGGTTGGTTAGCTGGTGCTACAGGGGCTCAACCCTGTTACAAATCCCCCTCCCCCTAGGAATCCCTAcgagagtaggagggagggggGTCTGAGGTACCCTGTCTAGTCAGGCTCAATGTGgataagagaagaggaggagtagggaggagcaggagagaggagtagggaggagtagggaggagtagagaagaggagTAGGGAGGGGGGTCTGAGGTACCCTGTCTAGTCAGtagggaggagcaggagagagaagtagggaggagtagggaggagcaggagtagggaggagcaggagagaggagggaggagtggagaagaggaggagtaggagagaggaggagtagggaggagtggagaagaggaggagggaggagtaaggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagggaggagtagggaggagtggagaagaggaggagggaggggggtctGAGGTACCCTGTCTAGTCAGGCTCAATGTggacaagagaagaggaggagtaaggaggagcaggagaagaggaggagggaggagtggagaagaggaggagggaggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagcaggATAAGAGgcggagggaggagtggagaagaggaggagtagggaggagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagagaggagtagggaggagcaggagaaggggaggagagaggagtggagaagaggaggagtagggaggagtggagaagaggagtagtagggaggagcaggagagaagagtagggaggagcaagagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagagggaggagtagggaggagcaggagagaggaggagtagggaggagcggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagtggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaagagcaggagagaggaggagtggagaagaggaggagtacggaggagcaggagagaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggaggagtggagtagaggaggagtggagaagaggaggagtagggaggagcaggagaagaggaggagggaggagtggagaagaggaggagtagggagtcgaggagaagaggaggagtagggaggagtggagaagtggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaacaggaggagtagggaAGAGTTGAGAAGAGGATGAGTAGGGAGGAgtggaaaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtagggaggagtagggaggagtggagaagtggaggagtagggaggagtggagaagtggagtagtagggaggagtggagaagtggaggagtagggaggagtggaggagtagggaggagtggagaagaggagtggagaataggaggagtagggaggagtaaggaggagtggagaagaggaggagtggagaagaggaggagtagggaggagtggaggagaggagtagggagaAGTAAgtaggagtggagaagaggaggagtagggaggagtggagaagaggaggagtggagaagaggagagagtgtggaCAGTTCCATCAGGAGCGaagcaggagggaggagagggagtagagaggaggactaTGAAAGATGGGTCTGAGGTACTGGCTGGGGTAtggtgagaaagagagtggagcGAGTAAAGAGGGAGTTAAGGAGAACAGGGGTATGGTGATTGTTCCTGTTGTGATTCTGCTGGTCCAGTCTCATCCAGGTCTGGTATAGAGGtggtcccagtcccagtcttacTGGTCCCAGTCACCATggggaaggtgaaccttcgttcTGTGACGTCTAGCCAGCCTCGGGGGGAGGAGGGGGCTGCCCAGCGGGAGGGGGGGCGGCGGTTGGCTGGCCTCGCCGGGCGCAGGAAACACGACTCCAGGGGCGGAGCCACCGGGGAGCGAGGGAGGTCCTTCAGGAGGAAgtagatgtgagagagagagagagagagagagagagagacaaaatagCTTCCTATATTCATAGGTTTTCATGATGATTATTTTAAGAATTAGAAAAAGACATTACCCAAGACAGAAGAAAAGAAGTATTAACAAAAGTAAGTGTGATTAAAacagaaaaacaaataatgaCCACAATATAGATCAGGAGGAAACACCATGTGGTGGAACTACAGTGggatgaaacaggtggaggaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggtggaactacagggtgatgaaacaggtggtgaaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtgggaggaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggtggaactacagggtgatgaaacaggtggagaaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggaggagctacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggaggaactacagggtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggaggagctacagggtgatgaaacaggtgggaggaactacagggtgatgaaacaggtggaggaactacagggtgatgaaacaggtgggaggaactacagtgtgatgaaacaggtggaggaactacagtgtgatgaaacaggtggagaAGCTAGTTAGTTAGCATGAATGATGATGATCACACAGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862447 lncRNA upstream 190 88080980 ~ 88081831 (+) True G759019
TU862446 lncRNA upstream 631 88080980 ~ 88081390 (+) False G759019
TU862443 lncRNA upstream 1553 88078082 ~ 88080468 (+) False G759018
TU862442 lncRNA upstream 1553 88078730 ~ 88080468 (+) False G759018
TU862445 lncRNA upstream 1553 88078730 ~ 88080468 (+) True G759018
TU862502 lncRNA downstream 81257 88169064 ~ 88175409 (+) True G759055
TU862522 lncRNA downstream 133748 88221555 ~ 88224684 (+) True G759064
TU862545 lncRNA downstream 163484 88251291 ~ 88251637 (+) True G759080
TU862550 lncRNA downstream 176146 88263953 ~ 88264693 (+) True G759085
TU862556 lncRNA downstream 188682 88276489 ~ 88277177 (+) True G759089
XM_036986662.1 mRNA upstream 22318 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 22318 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 22318 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 22318 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 306574 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 537634 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 558593 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 558595 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 558595 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 558596 88646403 ~ 88667320 (+) True LOC110510805
TU862403 other upstream 86876 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 110092 87965692 ~ 87971929 (+) True G758976
TU862276 other upstream 205337 87875120 ~ 87876684 (+) True G758892
TU862226 other upstream 348882 87732294 ~ 87733139 (+) True G758866
TU861774 other upstream 364303 87716817 ~ 87717718 (+) True G758531
TU862468 other downstream 21199 88109006 ~ 88110300 (+) True G759031
TU863171 other downstream 610167 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 610167 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 773272 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 773472 88861279 ~ 88861828 (+) True G759598

Expression Profile