RNA id: TU862522


Basic Information

Item Value
RNA id TU862522
length 2795
lncRNA type intronic
GC content 0.39
exon number 3
gene id G759064
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88221555 ~ 88224684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaacatactgagttatatttctgtggctgtaactgtggaaacatactgaggtGTCTTTGTCTCTTGAGTGGAATAAGATTGTTCTCAACATTTCAGCCACTCCTATGTTTTCATAAACCTCTGAGACATTTTAGAGGGAAATTTCCAAGCGACACCATAAAATTACATCATAAAATGACATCATCAGAAATTATACTACGCCcagagagaaaaatacaaaacttaagagagagagggagagagagagagagagagagagagagagaaagagagagagagagaaagagtatgtGTGCGTTTGTGATGCATTAGTTGACCCATGCGGTTATATCTGTGGGGAGAGCGAGTTTAaggtcattaaatattgtgtggctGAAGGACAGATGGTGCAATTTATATCAATAGACTACATTTAGgtttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagtagagaggaccagaacagtagtctaatgttatagaagaggtccagaacagtagtctaatgttatagaagagaggaccagagaagtagtctaatgttatagtagagaggaccagaacagtagtcatttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagtagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccaaaacagtagtctgttatagaagagaggaccagaacagtagtctgttatagaatagaggaccagaacagtagtctgttatagaagagttatagaagagaggaccagaacagtagtctaatgttgtagaagagaggaccagaacagtagtctgatgttatagaagagaggaccagaacagtagtctgttctagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacagtagtctaatgttatagaagaaaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagaaaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagtagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctaatgttatagaagaaaggaccagaacagtagtctaatgttatagaagagaggaccagaacagtagtctgttatagaagagaggaccagaacaggcATGTTTGGGAAAGATTAGGAGAAGTGTTAAAAGAGGCTGATAgcagtgtggtgttgtgtgtgatgattgtgaggagCTATACACGTTTTGACTGAGGATCAGGAGTGGAGCAATAGGAtttatttctttcagcatcttgagagactGTGAATGTGCAGTTAGGGACCGTATGTAAAGGTgctgtctttatcagcatcataacaGCTGATAGTCTTTCAACCACAGTTAGGGACCGTATGTAAAGGTGTTGTCTTTATCAACATCATAACAGCTGATAGTCTTTCAACCACAGTTAGGGACCGTATGTAAAGGTgctgtctttatcagcatcataacaGCTGGCAATATTTCAACCACAGTTAGGGACCGTATGTAAAGGTGttgtctttatcagcatcataacaGCTGGCAATATTTCAACCACATTAAATATACTTCCAAGctgaactgaaatcttatcagaaacatgttgggtggttttcacagctttctatgTCCTTACAACCAGTCAAACTGAtttttctccccggtccctaaaccTCTTTGCTCTGTGAAAGAAGCAGTGATGACAGAGAAAACGTTACCGATATCAACTAGATGGAAACATCCATTCTATCATGTATGACATTATTCTGGAGAGCAGGGGTTTCTTCACTCTTCTGgggcaacatataatgacagtagagaagCTGTATGTATCTCATTATAGACAAGATGACTAACAAATAGTGAACCAAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862502 lncRNA upstream 46146 88169064 ~ 88175409 (+) True G759055
TU862452 lncRNA upstream 133748 88082021 ~ 88087807 (+) False G759020
TU862447 lncRNA upstream 139724 88080980 ~ 88081831 (+) True G759019
TU862446 lncRNA upstream 140165 88080980 ~ 88081390 (+) False G759019
TU862442 lncRNA upstream 141087 88078730 ~ 88080468 (+) False G759018
TU862545 lncRNA downstream 26607 88251291 ~ 88251637 (+) True G759080
TU862550 lncRNA downstream 39269 88263953 ~ 88264693 (+) True G759085
TU862556 lncRNA downstream 51805 88276489 ~ 88277177 (+) True G759089
TU862560 lncRNA downstream 58163 88282847 ~ 88283987 (+) True G759091
TU862567 lncRNA downstream 73239 88297923 ~ 88301084 (+) True G759098
XM_036986662.1 mRNA upstream 161852 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 161852 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 161852 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 161852 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 446108 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 400757 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 421716 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 421718 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 421718 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 421719 88646403 ~ 88667320 (+) True LOC110510805
TU862468 other upstream 111255 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 114608 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 114608 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 226410 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 249626 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 473290 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 473290 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 636395 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 636595 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 855881 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile