RNA id: TU862573


Basic Information

Item Value
RNA id TU862573
length 431
lncRNA type intronic
GC content 0.46
exon number 3
gene id G759099
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88302975 ~ 88305814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatgtggagctactgttctccatcattctatcagcagacagcactctgactgatgtggagctactgttctccatcattctatcagcagacagcactctgaggtggagctactgttctccattattctatcagcagacagcactctgatgtggagctactgttctccatcattctatcagcagacagcactctgactgatgtggagctactgttctccatcattctatcagcagactgactgatgtggagctactgttctccatcattctatcagcagactgactgatgtggagctactgttctccattattctatcagcagacagcactctgatgtggagctactgttctccatcattctatcagcagacagcactctgatgtggagctactgttctccatcattctatcagcagagagcactctgatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862567 lncRNA upstream 1891 88297923 ~ 88301084 (+) True G759098
TU862560 lncRNA upstream 18988 88282847 ~ 88283987 (+) True G759091
TU862556 lncRNA upstream 25798 88276489 ~ 88277177 (+) True G759089
TU862550 lncRNA upstream 38282 88263953 ~ 88264693 (+) True G759085
TU862545 lncRNA upstream 51338 88251291 ~ 88251637 (+) True G759080
TU862591 lncRNA downstream 15369 88321183 ~ 88321803 (+) True G759112
TU862604 lncRNA downstream 34405 88340219 ~ 88341805 (+) True G759119
TU862609 lncRNA downstream 36592 88342406 ~ 88346482 (+) True G759121
TU862615 lncRNA downstream 40800 88346614 ~ 88347020 (+) True G759125
TU862931 lncRNA downstream 61973 88367787 ~ 88368157 (+) True G759361
XM_036986662.1 mRNA upstream 243272 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 243272 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 243272 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 243272 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 527528 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 319627 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 340586 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 340588 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 340588 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 340589 88646403 ~ 88667320 (+) True LOC110510805
TU862468 other upstream 192675 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 196028 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 196028 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 307830 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 331046 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 392160 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 392160 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 555265 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 555465 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 774751 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile