RNA id: TU862931


Basic Information

Item Value
RNA id TU862931
length 371
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G759361
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88367787 ~ 88368157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatttggggagtttctcccagtgttgctgcacagctattttcaggtttctccagagatgttcggttttggttcaagtccgggctctggctgggacactcaaggacattcagagacttgtcccgaagccactcctgcgttgtcttgactgtgtgcttagggttgttgtcctgttggaagaataacctttgccctagtctgaggtcctgagggatctggagcaggttttcatcaaagatctctctgtactttgctccgttcatctttcccttgatcctgactagtctcccagtccctgccactgaaaaacatccccacagcatgatgctgccaccaccatgtctcaccgaagggatggtgccaggttccttA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862615 lncRNA upstream 20767 88346614 ~ 88347020 (+) True G759125
TU862609 lncRNA upstream 21305 88342406 ~ 88346482 (+) True G759121
TU862604 lncRNA upstream 25982 88340219 ~ 88341805 (+) True G759119
TU862591 lncRNA upstream 45984 88321183 ~ 88321803 (+) True G759112
TU862573 lncRNA upstream 61973 88302975 ~ 88305814 (+) True G759099
TU862937 lncRNA downstream 4010 88372167 ~ 88372431 (+) True G759365
TU862938 lncRNA downstream 4288 88372445 ~ 88372919 (+) True G759366
TU862942 lncRNA downstream 5767 88373924 ~ 88374130 (+) True G759370
TU862946 lncRNA downstream 8891 88377048 ~ 88377278 (+) True G759374
TU862949 lncRNA downstream 10818 88378975 ~ 88379190 (+) True G759377
XM_036986662.1 mRNA upstream 308084 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 308084 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 308084 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 308084 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 592340 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 257284 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 278243 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 278245 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 278245 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 278246 88646403 ~ 88667320 (+) True LOC110510805
TU862468 other upstream 257487 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 260840 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 260840 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 372642 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 395858 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 329817 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 329817 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 492922 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 493122 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 712408 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile