RNA id: TU862938


Basic Information

Item Value
RNA id TU862938
length 475
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G759366
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88372445 ~ 88372919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATTTATTTAACAAGCAAAATAGACAGATAGGCAGAGATCCTGGATGTTATAAGAGCTACAATAGACAGCTCGGCAGAGATCCTGGATGTTATAAGAGCTACAATAGACAGCTAGGCAGAGATCCTGGATGTTATAAGAGACGCTGCAGGCTGTTGTGTATTTGTTGTGGTTGTATGTAGTTCATGTGGATTCCTTTAGGATAAATGACTACCCATTTACTTTATCTCTCACGCAGTAATAAACCATAATCATAGTCTGTAGTTACAGTCTGTGTTTACAGTCAGGGTCATGTTGTTGTTAGTGTCTCTGTacataaaacactgtgtttacaGTCAGTGTCATGTTGTTGTTAGTGTCTCTGTACATAAAACACTGTGGTTATTTGGACCTAAAGCTACTAAATGATTGAGAGGCCATGTTTTAACGAGACAGGATGTGTCCttgttcccttcatagtgcactactttagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862937 lncRNA upstream 14 88372167 ~ 88372431 (+) True G759365
TU862931 lncRNA upstream 4288 88367787 ~ 88368157 (+) True G759361
TU862615 lncRNA upstream 25425 88346614 ~ 88347020 (+) True G759125
TU862609 lncRNA upstream 25963 88342406 ~ 88346482 (+) True G759121
TU862604 lncRNA upstream 30640 88340219 ~ 88341805 (+) True G759119
TU862942 lncRNA downstream 1005 88373924 ~ 88374130 (+) True G759370
TU862946 lncRNA downstream 4129 88377048 ~ 88377278 (+) True G759374
TU862949 lncRNA downstream 6056 88378975 ~ 88379190 (+) True G759377
TU862988 lncRNA downstream 63122 88436041 ~ 88443469 (+) False G759412
TU862989 lncRNA downstream 63122 88436041 ~ 88437604 (+) True G759412
XM_036986662.1 mRNA upstream 312742 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 312742 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 312742 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 312742 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 596998 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 252522 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 273481 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 273483 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 273483 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 273484 88646403 ~ 88667320 (+) True LOC110510805
TU862468 other upstream 262145 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 265498 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 265498 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 377300 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 400516 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 325055 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 325055 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 488160 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 488360 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 707646 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile