RNA id: TU863012


Basic Information

Item Value
RNA id TU863012
length 439
lncRNA type intronic
GC content 0.41
exon number 2
gene id G759422
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88432041 ~ 88438241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttacaccagattactcattacaccaggttactcatcacaccagattactcattacaccaggttactcattataccaggttactcattacaccaggttaaaccagattactcattacaccaggttactcattacaccaggttacaccagattactcattacaccaggttactcattacacctggttactcatcacaccaggttacaccaggttactcatcacacctggttactcattacaccatgttactcattacaccaggttactcattacaccgggttactcattacaccaggttacaccaggttactaATTATACCAGGTTAcacattacaccaggttactcattacaccaggttacaccaggttactcattacaccatgTTACTCATCAGACcaggttacaccaggttactcatcacacTAGGTTACTCATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU862950 lncRNA downstream 56840 88378973 ~ 88379339 (-) True G759378
TU862943 lncRNA downstream 61613 88374244 ~ 88374566 (-) True G759371
TU862934 lncRNA downstream 65393 88370002 ~ 88370786 (-) False G759364
TU862936 lncRNA downstream 65679 88370002 ~ 88370500 (-) True G759364
TU862909 lncRNA downstream 94819 88338494 ~ 88341360 (-) True G759349
TU863032 lncRNA upstream 38350 88476591 ~ 88477153 (-) True G759442
TU863036 lncRNA upstream 50070 88488311 ~ 88491151 (-) True G759446
TU863072 lncRNA upstream 81811 88520052 ~ 88520659 (-) True G759478
TU863073 lncRNA upstream 83013 88521254 ~ 88521646 (-) True G759479
TU863749 lncRNA upstream 110275 88548516 ~ 88548864 (-) True G759987
XM_036986670.1 mRNA downstream 73873 88342455 ~ 88362306 (-) True LOC110509139
XM_036986663.1 mRNA downstream 104684 88085908 ~ 88331495 (-) False LOC110518901
XM_036986685.1 mRNA upstream 233224 88671465 ~ 88694158 (-) False LOC110530889
XM_036986684.1 mRNA upstream 233224 88671465 ~ 88710355 (-) False LOC110530889
XM_036986679.1 mRNA upstream 233224 88671465 ~ 88715571 (-) False LOC110530889
XM_036986680.1 mRNA upstream 233224 88671465 ~ 88715571 (-) False LOC110530889
XM_036986681.1 mRNA upstream 233224 88671465 ~ 88715571 (-) False LOC110530889
TU862683 other downstream 493357 87940904 ~ 87942822 (-) True LOC110530858
TU860865 other downstream 2203987 86230374 ~ 86232192 (-) False G757788
TU860867 other downstream 2203987 86230374 ~ 86232192 (-) False G757788
TU860868 other downstream 2203987 86230374 ~ 86232192 (-) False G757788
TU860438 other downstream 2572292 85863011 ~ 85863887 (-) True G757422
TU863742 other upstream 97399 88535640 ~ 88536047 (-) True G759982
TU863763 other upstream 225363 88663604 ~ 88665140 (-) False G759998
TU863860 other upstream 264750 88702991 ~ 88704054 (-) True G760051
TU863910 other upstream 389743 88827984 ~ 88830811 (-) False LOC110530888
TU863899 other upstream 389830 88828071 ~ 88830811 (-) False LOC110530888

Expression Profile