RNA id: TU863048


Basic Information

Item Value
RNA id TU863048
length 238
lncRNA type intronic
GC content 0.41
exon number 1
gene id G759457
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88506027 ~ 88506264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatctagatttctaaggcacttgcttgcagttcctatcgcttccactggatgtcaacagtctttagaaattggttgatgtttttcctttgagaaatgaagaagtagggctgttcagaacgagggtcgagtgaagtgtactgtttgttagagaAGTGTGACCTGAAAACTCGCTCCACGTTGTTTTAATCCGCTATTGAGCAGCAGTTTATCCCGTCTCAAattgtattgattattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863037 lncRNA upstream 11231 88494322 ~ 88494796 (+) True G759447
TU862992 lncRNA upstream 58244 88446937 ~ 88447783 (+) True G759415
TU862988 lncRNA upstream 62558 88436041 ~ 88443469 (+) False G759412
TU862989 lncRNA upstream 68423 88436041 ~ 88437604 (+) True G759412
TU862949 lncRNA upstream 126837 88378975 ~ 88379190 (+) True G759377
TU863052 lncRNA downstream 2939 88509203 ~ 88509567 (+) True G759461
TU863079 lncRNA downstream 29926 88536190 ~ 88536438 (+) True G759485
TU863090 lncRNA downstream 43538 88549802 ~ 88551602 (+) True G759494
TU863092 lncRNA downstream 49880 88556144 ~ 88556861 (+) True G759496
TU863107 lncRNA downstream 85078 88591342 ~ 88597730 (+) True G759509
XM_036986662.1 mRNA upstream 446324 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 446324 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 446324 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 446324 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 730580 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 119177 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 140136 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 140138 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 140138 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 140139 88646403 ~ 88667320 (+) True LOC110510805
TU862468 other upstream 395727 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 399080 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 399080 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 510882 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 534098 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 191710 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 191710 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 354815 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 355015 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 574301 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile