RNA id: TU863052


Basic Information

Item Value
RNA id TU863052
length 365
lncRNA type intronic
GC content 0.47
exon number 1
gene id G759461
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88509203 ~ 88509567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acttctgaccagggccctatggagtGCCATAAGGAATAaggatatagtgcactacttctgaccagggccctatggagtGTCATAAGGAATAaggatatagtgcactacttctgaccagggccctatggagtGTCATAaggatatagtgcactacttctgaccagggccctatggagtGTCATAAGGAATAAGCATATAGTGCAATACTTCTGACCAGGCCCCTATGGAGTGTCATAaggatatagtgcactacttctgaccagggccctatggagtGTCATAaggatatagtgcactacttctgaccagggccctatggagtGTCATAaggatatagtgcactacttctgaccagggccctatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863048 lncRNA upstream 2939 88506027 ~ 88506264 (+) True G759457
TU863037 lncRNA upstream 14407 88494322 ~ 88494796 (+) True G759447
TU862992 lncRNA upstream 61420 88446937 ~ 88447783 (+) True G759415
TU862988 lncRNA upstream 65734 88436041 ~ 88443469 (+) False G759412
TU862989 lncRNA upstream 71599 88436041 ~ 88437604 (+) True G759412
TU863079 lncRNA downstream 26623 88536190 ~ 88536438 (+) True G759485
TU863090 lncRNA downstream 40235 88549802 ~ 88551602 (+) True G759494
TU863092 lncRNA downstream 46577 88556144 ~ 88556861 (+) True G759496
TU863107 lncRNA downstream 81775 88591342 ~ 88597730 (+) True G759509
TU863112 lncRNA downstream 88855 88598422 ~ 88690153 (+) True G759513
XM_036986662.1 mRNA upstream 449500 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 449500 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 449500 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 449500 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 733756 87745792 ~ 87775447 (+) True LOC110513441
XM_036986671.1 mRNA downstream 115874 88625441 ~ 88642762 (+) True LOC110510807
XM_036986676.1 mRNA downstream 136833 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 136835 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 136835 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 136836 88646403 ~ 88667320 (+) True LOC110510805
TU862468 other upstream 398903 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 402256 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 402256 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 514058 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 537274 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 188407 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 188407 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 351512 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 351712 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 570998 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile