RNA id: TU863112


Basic Information

Item Value
RNA id TU863112
length 596
lncRNA type read_through
GC content 0.47
exon number 2
gene id G759513
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88598422 ~ 88690153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGAGGCAgagaggaggagataagatgatagcagtcacatctacaggagaggagaggaggagataagatgatagcagtcacatctagaggagaggaggagataagatgatagcagtcacatctataggagaggagaggaggagataagatgatagcagtcacatctacaggagaggagaggaggagataagatgatagcagtcacatctataggagaggagaggaggagataagatgatagcagtcacatctacaggagaggagaggaggagataagatgatagcagtcacatctataggagaggagaggaggagataagatGATAGcaatcacatctacaggagaggagaggaggagataagatgatagcagtcacatctataggagaggagaggatgagataaGATGATAGcggtcacatctacaggagaggagaggaggagataagatGATAAGATAAGAtccttctacagctgcaccattgagagcactggttgcatcactgtctggtatggcaactactcagcctccgaccacaaggcactacagagggtagtgcgaacggcccagtacatcactggggccaaacttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863107 lncRNA upstream 692 88591342 ~ 88597730 (+) True G759509
TU863092 lncRNA upstream 41561 88556144 ~ 88556861 (+) True G759496
TU863090 lncRNA upstream 46820 88549802 ~ 88551602 (+) True G759494
TU863079 lncRNA upstream 61984 88536190 ~ 88536438 (+) True G759485
TU863052 lncRNA upstream 88855 88509203 ~ 88509567 (+) True G759461
TU863169 lncRNA downstream 4325 88694478 ~ 88696111 (+) True G759555
TU863174 lncRNA downstream 9521 88699674 ~ 88700171 (+) True G759556
TU863179 lncRNA downstream 15245 88705398 ~ 88706202 (+) True G759560
TU863085 lncRNA downstream 16181 88706334 ~ 88707776 (+) True G759489
TU863187 lncRNA downstream 111338 88801491 ~ 88802329 (+) True G759567
XM_036986662.1 mRNA upstream 538719 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 538719 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 538719 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 538719 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 822975 87745792 ~ 87775447 (+) True LOC110513441
XR_005052997.1 mRNA downstream 196681 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 384471 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 384472 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 404683 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 404683 89094836 ~ 89113049 (+) False fubp1
TU862468 other upstream 488122 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 491475 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 491475 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 603277 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 626493 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 7821 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 7821 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 170926 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 171126 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 390412 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile