RNA id: TU863142


Basic Information

Item Value
RNA id TU863142
length 280
lncRNA type intronic
GC content 0.43
exon number 2
gene id G759533
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88634873 ~ 88635724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCTGTTTGTTCAGGACATATCCCAGGACATATCCCAGACCACATGAATACCTTAATGTATCTGAGCTGTTTGTTCAGGACATATCCCAGGACATATCCCCGACCACATGAATACCTTAATGTATCTGAGCTGTTTGTTCAGGACATATCCCAGGACATATCCCAGACCACATGAATACCTTAATGTATCTGAGCTGTTTGTTCAGGACATATCCCAGGACATATCCCAGACCACATGAATACCTTAATGTGTCTGAGCTGTTTGTTCTTgtcatttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863120 lncRNA upstream 30748 88603996 ~ 88604621 (+) True G759516
TU863107 lncRNA upstream 37639 88591342 ~ 88597730 (+) True G759509
TU863092 lncRNA upstream 78508 88556144 ~ 88556861 (+) True G759496
TU863090 lncRNA upstream 83767 88549802 ~ 88551602 (+) True G759494
TU863079 lncRNA upstream 98931 88536190 ~ 88536438 (+) True G759485
TU863146 lncRNA downstream 14661 88650385 ~ 88650992 (+) True G759536
TU863148 lncRNA downstream 17566 88653290 ~ 88653703 (+) True G759538
TU863169 lncRNA downstream 58754 88694478 ~ 88696111 (+) True G759555
TU863174 lncRNA downstream 63950 88699674 ~ 88700171 (+) True G759556
TU863179 lncRNA downstream 69674 88705398 ~ 88706202 (+) True G759560
XM_036986662.1 mRNA upstream 575666 88017220 ~ 88059703 (+) False acss2l
XM_036986659.1 mRNA upstream 575666 88017227 ~ 88059703 (+) False acss2l
XM_036986661.1 mRNA upstream 575666 88017456 ~ 88059703 (+) False acss2l
XM_036986660.1 mRNA upstream 575666 88026784 ~ 88059703 (+) True acss2l
XM_036986650.1 mRNA upstream 859922 87745792 ~ 87775447 (+) True LOC110513441
XM_036986676.1 mRNA downstream 10676 88646400 ~ 88662958 (+) False LOC110510805
XM_036986675.1 mRNA downstream 10678 88646402 ~ 88663381 (+) False LOC110510805
XM_036986673.1 mRNA downstream 10678 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA downstream 10679 88646403 ~ 88667320 (+) True LOC110510805
XR_005052997.1 mRNA downstream 251110 88886834 ~ 88903834 (+) False LOC118965580
TU862468 other upstream 525069 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 528422 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 528422 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 640224 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 663440 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 62250 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 62250 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 225355 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 225555 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 444841 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile