RNA id: TU863169


Basic Information

Item Value
RNA id TU863169
length 1436
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G759555
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88694478 ~ 88696111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagacagagacagacagatagagcgagagagagagagagccagacagatacagacagacagagagagatagagagagaggcagatagagaaaGATACTTACTGAAAGTTGACTTTGTCTACCTGGAATCGGGTCTCGAATATCCCTGAAGTTAACACTCTGCATCGTAGCAGGTCCTGGTCTGTGGGACTGTAGTCTCCTTGTCTTACTGAGTCAATTCTGTCCAGGAAActgcagagacaaacacacacacaccgttatcAATCGTGTCATTCTGTGTCACTAGGGTTGACTGTAGTCTCCTTGTCTTACTGAGTCAATTCTGTCCAGGAAActgcagagacacacacacaccgttATCACTCATGTCATTCTGTGTCACTAGGGTTGACTGTGGGCTCTCGTCCTCTGTGGCCGGTGTGatcaagacatttaaacgtgttaaccctcgcaaggctgccggcccaggtggcatccccagccgcgtcctcagagcatgctggagctggctggagtgttaattaacagacatattaaatctctccctatcccagtctgctgtccccacatgcttcaagatgtccaccattgttcctgttcccaagaaggcaaagataactgaactaaatgactaccgccccgtagcactcacttctgtcatcctgaagtgctttgagagactagtcaaggaccatatcacctccaccctacctgacaccctagacccacttcaatatgtttaccgccccaatagatccacagacgatgcaatcgccatcacactgccctaccccatctggacaagaggaatacctatgtgagaatgctgtgcATCGACTACAGcctagcattcaacaccatagtactcaTCATTATGCTTGAggccatgggtctgaaccccgccctgtgcaactgcggtctgcccaacgcatcaccggggacaaactgcCTAcaatccaggacacctacagcacccgatgtcacaggaaggctgaAAAGATAATCAAGAACATCAAtcaccgagccactgcctgttcaccccgagctgggaccgagagactgaaaacagattatatctcaaggccatcagactgtcaaaaagccatcactagccggctaccacccagtaccctgccctgaacctaatCACTGTCATCAGCCGGCTACCACTCAGTACCAGGCCCTGAATCTAATCACTGTCACTAACCGGCTACCACCCagcaccctgccctgaacctaatCACTGTCACTAACCGGCTACCACCCagcaccctgccctgaacctaatCACTGTCACtaaccggctaccacccagtaccctgccctgaacctaatCACTGTCATCAGCCGGCTACCACTCAGTACCAGGCCCTGAATCTAATCACTGTCACTAACCGGCTACCACCCagcaccctgccctgaacctaatCACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863112 lncRNA upstream 4325 88598422 ~ 88690153 (+) True G759513
TU863148 lncRNA upstream 40775 88653290 ~ 88653703 (+) True G759538
TU863146 lncRNA upstream 43486 88650385 ~ 88650992 (+) True G759536
TU863141 lncRNA upstream 58754 88634873 ~ 88635724 (+) False G759533
TU863142 lncRNA upstream 58754 88635369 ~ 88635724 (+) True G759533
TU863174 lncRNA downstream 3563 88699674 ~ 88700171 (+) True G759556
TU863179 lncRNA downstream 9287 88705398 ~ 88706202 (+) True G759560
TU863085 lncRNA downstream 10223 88706334 ~ 88707776 (+) True G759489
TU863187 lncRNA downstream 105380 88801491 ~ 88802329 (+) True G759567
TU863196 lncRNA downstream 113935 88810046 ~ 88811160 (+) True G759571
XM_036986673.1 mRNA upstream 27158 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 27158 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 31097 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 31520 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 51716 88625441 ~ 88642762 (+) True LOC110510807
XR_005052997.1 mRNA downstream 190723 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 378513 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 378514 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 398725 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 398725 89094836 ~ 89113049 (+) False fubp1
TU862468 other upstream 584178 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 587531 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 587531 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 699333 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 722549 87965692 ~ 87971929 (+) True G758976
TU863171 other downstream 1863 88697974 ~ 88701419 (+) False G759556
TU863172 other downstream 1863 88697974 ~ 88701075 (+) False G759556
TU863230 other downstream 164968 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 165168 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 384454 89080565 ~ 89094340 (+) False slc25a24l

Expression Profile