RNA id: TU863171



Basic Information


Item Value
RNA id TU863171
length 894
RNA type TUCP
GC content 0.54
exon number 4
gene id G759556
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88697974 ~ 88701419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGAGTGAGGAAGGCCAGTGGTACAGTAGATGgacccgtatggtggatggagtgaggaaggccagtggtacagtagatggacccgtatggagtgaggaaggccagtggtacagtagatggacccgtatggtggatggagtgaggaaggccagtggtacagtagatggacccgtatggtggatggagtgaggaaggccagtggtacagtagatggatccgtatggtggatggagtgaggaaggccagtggtacagtagatggacccgtatggtggatggagtgaggaaggccAGTGGTACAGTAGATGGACCCGAATGGAGTGAGGAAGGCCAGTGGTACAGTAGATGGACCCGAATGGAGTGAGGAAGGCCAGTGGTACAGTAGATGgacccgtatggtggatggagtgaggaaggccAGTAGTACAGTAGATGGACCCGTATGGAGTGAGGAAGGCCAGTGGTACAGTAGATGgacccgtatggtggatggagtgaggaaggccAGTGGTACAGTAGATGGACCCGTATGGAGTGAGGAAGGCCAGTAGTACAGTAGAGGgacccgtatggtggatggagtgaggaaggccagtagtacagtagatggacccgtatggtggatggagtgaggaaggtcagtagtacagtagatggacccgtatggtggatggagtgaggaagGCCAGTAGTACAGTAGATGgacccgtatggtggatggagtgaggaaggccAGTAGTACAGTAGATGGACCCGTATGGAGTGAGGAAGGCCAGTGGTACAGTAGATGgacccgtatggtggatggagtgaggaaggccAGTAGTACAGTAGATGGGCCCGTATGGAGTGAGGAAGGCCAGTAGTACAGTAGATGGACCCGTATGGTGGATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863169 lncRNA upstream 1863 88694478 ~ 88696111 (+) True G759555
TU863112 lncRNA upstream 7821 88598422 ~ 88690153 (+) True G759513
TU863148 lncRNA upstream 44271 88653290 ~ 88653703 (+) True G759538
TU863146 lncRNA upstream 46982 88650385 ~ 88650992 (+) True G759536
TU863141 lncRNA upstream 62250 88634873 ~ 88635724 (+) False G759533
TU863179 lncRNA downstream 3979 88705398 ~ 88706202 (+) True G759560
TU863085 lncRNA downstream 4915 88706334 ~ 88707776 (+) True G759489
TU863187 lncRNA downstream 100072 88801491 ~ 88802329 (+) True G759567
TU863196 lncRNA downstream 108627 88810046 ~ 88811160 (+) True G759571
TU863212 lncRNA downstream 124634 88826053 ~ 88826279 (+) True G759582
XM_036986673.1 mRNA upstream 30654 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 30654 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 34593 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 35016 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 55212 88625441 ~ 88642762 (+) True LOC110510807
XR_005052997.1 mRNA downstream 185415 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 373205 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 373206 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 393417 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 393417 89094836 ~ 89113049 (+) False fubp1
TU862468 other upstream 587674 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 591027 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 591027 88082021 ~ 88106947 (+) True G759020
TU862403 other upstream 702829 87991970 ~ 87995145 (+) True G758988
TU862389 other upstream 726045 87965692 ~ 87971929 (+) True G758976
TU863230 other downstream 159660 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 159860 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 379146 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 379146 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 866584 89568003 ~ 89659347 (+) True LOC118965583

Expression Profile