RNA id: TU863217


Basic Information

Item Value
RNA id TU863217
length 291
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G759586
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88834643 ~ 88834933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCATATCCACACCAAaaataccagcctggtctcagactaggcgtaacatagtaaatttaaatccgggacactcaaattagtattatAATGTTACGGTTACATAATACGGAtcgttacttaaggcaaaaaacaaaagtagggtggttgaTCAAGGTAGATGGGTGGGCAATATAACgcaaacatctagcaacccaaaggttgtgagcTTGAATCTCATCCTGGACAACTTTAGCAACTACTTTCtagctacttagcatgttagctaacccttcccctaaacctttaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863212 lncRNA upstream 8364 88826053 ~ 88826279 (+) True G759582
TU863196 lncRNA upstream 23483 88810046 ~ 88811160 (+) True G759571
TU863187 lncRNA upstream 32314 88801491 ~ 88802329 (+) True G759567
TU863085 lncRNA upstream 126867 88706334 ~ 88707776 (+) True G759489
TU863179 lncRNA upstream 128441 88705398 ~ 88706202 (+) True G759560
TU863223 lncRNA downstream 13505 88848438 ~ 88848652 (+) True G759592
TU863227 lncRNA downstream 23417 88858350 ~ 88858723 (+) True G759596
TU863228 lncRNA downstream 25399 88860332 ~ 88860691 (+) True G759597
TU863229 lncRNA downstream 26146 88861079 ~ 88861565 (+) False G759598
TU863231 lncRNA downstream 26346 88861279 ~ 88861565 (+) False G759598
XM_036986673.1 mRNA upstream 167323 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 167323 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 171262 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 171685 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 191881 88625441 ~ 88642762 (+) True LOC110510807
XR_005052997.1 mRNA downstream 51901 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 239691 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 239692 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 259903 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 259903 89094836 ~ 89113049 (+) False fubp1
TU863171 other upstream 133224 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 133568 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 724343 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 727696 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 727696 88082021 ~ 88106947 (+) True G759020
TU863230 other downstream 26146 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 26346 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 245632 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 245632 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 733070 89568003 ~ 89659347 (+) True LOC118965583

Expression Profile