RNA id: TU863228


Basic Information

Item Value
RNA id TU863228
length 288
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G759597
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88860332 ~ 88860691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaatgaactgatcctctgcagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagacagtttcatcaaaATGCTTGATGGTTTTCCAGACTGCACTTGaatacattttctaaatgttttacattttccgcattgactgacctccatgtcttaaagtaatgatggactgtcgtttttctTTGCTCATTTAAGCGGTTCTTGCCatcatatggacttggtcttttatcaaatagggctatcttctgtataccacccctcccttgtcacaacacaac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863227 lncRNA upstream 1609 88858350 ~ 88858723 (+) True G759596
TU863223 lncRNA upstream 11680 88848438 ~ 88848652 (+) True G759592
TU863217 lncRNA upstream 25399 88834643 ~ 88834933 (+) True G759586
TU863212 lncRNA upstream 34053 88826053 ~ 88826279 (+) True G759582
TU863196 lncRNA upstream 49172 88810046 ~ 88811160 (+) True G759571
TU863229 lncRNA downstream 388 88861079 ~ 88861565 (+) False G759598
TU863231 lncRNA downstream 588 88861279 ~ 88861565 (+) False G759598
TU863206 lncRNA downstream 1331 88862022 ~ 88863062 (+) True G759577
TU863242 lncRNA downstream 35258 88895949 ~ 88896189 (+) True G759608
TU863207 lncRNA downstream 42189 88902880 ~ 88903758 (+) False LOC118965580
XM_036986673.1 mRNA upstream 193012 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 193012 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 196951 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 197374 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 217570 88625441 ~ 88642762 (+) True LOC110510807
XR_005052997.1 mRNA downstream 26143 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 213933 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 213934 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 234145 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 234145 89094836 ~ 89113049 (+) False fubp1
TU863171 other upstream 158913 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 159257 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 750032 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 753385 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 753385 88082021 ~ 88106947 (+) True G759020
TU863230 other downstream 388 88861079 ~ 88861828 (+) False G759598
TU863232 other downstream 588 88861279 ~ 88861828 (+) True G759598
TU863313 other downstream 219874 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 219874 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 707312 89568003 ~ 89659347 (+) True LOC118965583

Expression Profile