RNA id: TU863229



Basic Information


Item Value
RNA id TU863229
length 487
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G759598
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88861079 ~ 88861828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTTAAAACACAGTTGCAGTCAAAAGAGGCAGGAAAAGATGGTAGTTCTCTGGTAGTGAAGCAAAAAAGGCAAGAGATTCCAAACTCTAAAGAGATCCTAAGCATCCTGCGTTCCCAATATGCAGGTTTGGTAGATcacttgaaagagagagagaatttgaaaAAGCCTTCAGACGTGCAACAATTCTTAAGAGTAgagtttggaaagaaaacacagaGATTCCAAGAGGTGAAGAAAGTGAAGAGACTAATGGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGACACCAAAAGGAACTGGCTTCCTTCTGTTTAAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTACAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGGTGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863228 lncRNA upstream 388 88860332 ~ 88860691 (+) True G759597
TU863227 lncRNA upstream 2356 88858350 ~ 88858723 (+) True G759596
TU863223 lncRNA upstream 12427 88848438 ~ 88848652 (+) True G759592
TU863217 lncRNA upstream 26146 88834643 ~ 88834933 (+) True G759586
TU863212 lncRNA upstream 34800 88826053 ~ 88826279 (+) True G759582
TU863206 lncRNA downstream 457 88862022 ~ 88863062 (+) True G759577
TU863242 lncRNA downstream 34384 88895949 ~ 88896189 (+) True G759608
TU863207 lncRNA downstream 41315 88902880 ~ 88903758 (+) False LOC118965580
TU863208 lncRNA downstream 41896 88903461 ~ 88903833 (+) True LOC118965580
TU863254 lncRNA downstream 66511 88928076 ~ 88929046 (+) True G759618
XM_036986673.1 mRNA upstream 193759 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 193759 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 197698 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 198121 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 218317 88625441 ~ 88642762 (+) True LOC110510807
XR_005052997.1 mRNA downstream 25269 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 213059 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 213060 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 233271 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 233271 89094836 ~ 89113049 (+) False fubp1
TU863171 other upstream 159660 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 160004 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 750779 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 754132 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 754132 88082021 ~ 88106947 (+) True G759020
TU863313 other downstream 219000 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 219000 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 706438 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 834855 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1298705 90160270 ~ 90208959 (+) False G760623

Expression Profile