RNA id: TU863232


Basic Information

Item Value
RNA id TU863232
length 550
RNA type TUCP
GC content 0.44
exon number 1
gene id G759598
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88861079 ~ 88861828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttggaaagaaaacacagaGATTCCAAGAGGTGAAGAAAGTGAAGAGACTAATGGAGCTGAGTGCTTCTGTTTGTCAGGTGAGAATTGAAGGGACACCAAAAGGAACTGGCTTCCTTCTGTTTAAAAAGTTCATCCTTACAAACGCCCATGTTGTCCATCAAATCTATGAGCCGATAACTAACAAGCTACAACAATCGGTAACAGTCACGTTTGACTTTGAAGACCTGGGTGAGAGAACGCAGCAGATACCAGTGCAAAGTGAGGTTGTAGCCTATGGAAAAGTTGATTTGGGTTGTGTTGACTTTGCTTTGCTGGAGCTTAGCTCAGATCCTGACATCATCTTGCCTTCAAGCTTGCTTGACAGCTTCAGCTTTCCGTCTCTAGAGGGTGGAATCTGCATCGTCGGCCACCCCGAGGGCGGGGTGAAAAAGACAGACCCCTGCTTTATCATTCAACATGGAGATCGTAAACAAGCTGTAGAAAAACATGGAACAGAAAATGAGGAATTCTTACATGTCATAAACAACAGATATTTTGAGGAGAAATGGG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863228 lncRNA upstream 588 88860332 ~ 88860691 (+) True G759597
TU863227 lncRNA upstream 2556 88858350 ~ 88858723 (+) True G759596
TU863223 lncRNA upstream 12627 88848438 ~ 88848652 (+) True G759592
TU863217 lncRNA upstream 26346 88834643 ~ 88834933 (+) True G759586
TU863212 lncRNA upstream 35000 88826053 ~ 88826279 (+) True G759582
TU863206 lncRNA downstream 194 88862022 ~ 88863062 (+) True G759577
TU863242 lncRNA downstream 34121 88895949 ~ 88896189 (+) True G759608
TU863207 lncRNA downstream 41052 88902880 ~ 88903758 (+) False LOC118965580
TU863208 lncRNA downstream 41633 88903461 ~ 88903833 (+) True LOC118965580
TU863254 lncRNA downstream 66248 88928076 ~ 88929046 (+) True G759618
XM_036986673.1 mRNA upstream 193959 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 193959 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 197898 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 198321 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 218517 88625441 ~ 88642762 (+) True LOC110510807
XR_005052997.1 mRNA downstream 25006 88886834 ~ 88903834 (+) False LOC118965580
XM_021614153.2 mRNA downstream 212796 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 212797 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 233008 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 233008 89094836 ~ 89113049 (+) False fubp1
TU863171 other upstream 159860 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 160204 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 750979 88109006 ~ 88110300 (+) True G759031
TU862451 other upstream 754332 88082021 ~ 88106947 (+) False G759020
TU862454 other upstream 754332 88082021 ~ 88106947 (+) True G759020
TU863313 other downstream 218737 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 218737 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 706175 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 834592 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1298442 90160270 ~ 90208959 (+) False G760623

Expression Profile