RNA id: TU863927



Basic Information


Item Value
RNA id TU863927
length 433
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G760097
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88861111 ~ 88861543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCACTTTGCACTGGTATCTGCTGCGTTCTCTCACCCAGGTCTTCAAAGTCAAACGTGACTGTTACCGATTGTTGTAGCTTGTTAGTTATCGGCTCATAGATTTGATGGACAACATGGGCGTTTGTAAGGATGAACTTTTTAAACAGAAGGAAGCCAGTTCCTTTTGGTGTCCCTTCAATTCTCACCTGACAAACAGAAGCACTCAGCTCCATTAGTCTCTTCACTTTCTTCACCTCTTGGAATCtctgtgttttctttccaaactcTACTCTTAAGAATTGTTGCACGTCTGAAGGCTTtttcaaattctctctctctttcaagtgATCTACCAAACCTGCATATTGGGAACGCAGGATGCTTAGGATCTCTTTAGAGTTTGGAATCTCTTGCCTTTTTTGCTTCACTACCAGAGAACTACCATCTTTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863926 lncRNA downstream 1113 88859795 ~ 88859998 (-) True G760096
TU863925 lncRNA downstream 1709 88858957 ~ 88859402 (-) True G760095
TU863924 lncRNA downstream 3297 88857580 ~ 88857814 (-) True G760094
TU863922 lncRNA downstream 4956 88855309 ~ 88856155 (-) True G760092
TU863920 lncRNA downstream 11192 88849697 ~ 88849919 (-) True G760090
TU863953 lncRNA upstream 22572 88884115 ~ 88884361 (-) True G760115
TU863959 lncRNA upstream 34994 88896537 ~ 88896743 (-) True G760121
TU863962 lncRNA upstream 40239 88901782 ~ 88902789 (-) True G760124
TU863941 lncRNA upstream 41885 88903428 ~ 88903754 (-) True G760103
TU863963 lncRNA upstream 46462 88908005 ~ 88908252 (-) True G760125
XM_036986693.1 mRNA downstream 14510 88834557 ~ 88846601 (-) True pak1ip1
XM_036986689.1 mRNA downstream 27882 88828071 ~ 88833229 (-) False LOC110530888
XM_036986692.1 mRNA downstream 27958 88828071 ~ 88833153 (-) False LOC110530888
XM_036986686.1 mRNA downstream 29376 88828071 ~ 88831735 (-) False LOC110530888
XM_036986690.1 mRNA downstream 29419 88828071 ~ 88831692 (-) False LOC110530888
XM_036986694.1 mRNA upstream 3018 88864561 ~ 88883016 (-) True LOC110530885
XM_036986697.1 mRNA upstream 43769 88905312 ~ 88917235 (-) False LOC110530884
XM_021614171.2 mRNA upstream 43769 88905312 ~ 88919238 (-) False LOC110530884
XM_021614174.2 mRNA upstream 43769 88905312 ~ 88919238 (-) False LOC110530884
XM_036986698.1 mRNA upstream 43769 88905312 ~ 88919238 (-) False LOC110530884
TU863903 other downstream 29383 88828133 ~ 88831728 (-) False LOC110530888
TU863905 other downstream 29383 88828133 ~ 88831728 (-) False LOC110530888
TU863908 other downstream 30023 88828133 ~ 88831088 (-) False LOC110530888
TU863898 other downstream 30164 88828133 ~ 88830947 (-) False LOC110530888
TU864029 other upstream 155506 89017049 ~ 89017979 (-) True G760165
TU864056 other upstream 217755 89079298 ~ 89081345 (-) True G760182
TU864071 other upstream 238301 89099844 ~ 89102382 (-) True G760192
TU864226 other upstream 469738 89331281 ~ 89332776 (-) True G760306
TU864256 other upstream 512342 89373885 ~ 89407502 (-) True LOC118965582

Expression Profile