RNA id: TU863242


Basic Information

Item Value
RNA id TU863242
length 241
lncRNA type intronic
GC content 0.55
exon number 1
gene id G759608
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88895949 ~ 88896189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaccagtgggtccgtctcctctataccacccacctggtagtgtggtggatgggactaccagctctctgtaacctagaggacaaccagtgggtccatctcctctataccacccacctggtagtgtggtggatgggactaccagctctctgtaacctagagggcaaccagtgggtctgtctcctctataccacccacctggtagtgtggtggatgggactaccagctctctgtaacctagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863206 lncRNA upstream 32887 88862022 ~ 88863062 (+) True G759577
TU863229 lncRNA upstream 34384 88861079 ~ 88861565 (+) False G759598
TU863231 lncRNA upstream 34384 88861279 ~ 88861565 (+) False G759598
TU863228 lncRNA upstream 35258 88860332 ~ 88860691 (+) True G759597
TU863227 lncRNA upstream 37226 88858350 ~ 88858723 (+) True G759596
TU863207 lncRNA downstream 6691 88902880 ~ 88903758 (+) False LOC118965580
TU863208 lncRNA downstream 7272 88903461 ~ 88903833 (+) True LOC118965580
TU863254 lncRNA downstream 31887 88928076 ~ 88929046 (+) True G759618
TU863266 lncRNA downstream 43918 88940107 ~ 88944442 (+) True G759630
TU863272 lncRNA downstream 59268 88955457 ~ 88955763 (+) True G759636
XM_036986673.1 mRNA upstream 228629 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 228629 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 232568 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 232991 88646400 ~ 88662958 (+) False LOC110510805
XM_036986671.1 mRNA upstream 253187 88625441 ~ 88642762 (+) True LOC110510807
XM_021614153.2 mRNA downstream 178435 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 178436 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 198647 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 198647 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA downstream 198647 89094836 ~ 89113049 (+) False fubp1
TU863230 other upstream 34121 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 34121 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 194530 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 194874 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 785649 88109006 ~ 88110300 (+) True G759031
TU863313 other downstream 184376 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 184376 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 671814 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 800231 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1264081 90160270 ~ 90208959 (+) False G760623

Expression Profile