RNA id: TU863254



Basic Information


Item Value
RNA id TU863254
length 841
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G759618
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88928076 ~ 88929046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtatagttaACATTTACTGTCAGTCATAGATGGACACAAGAAAGGCAGAGAGTActgtatttaaataaataaaaattgtccaAATCGATCCCTAACCTCCAGCCACTCCTGTAGATTGAGAGACAGGATTGGATCGTTGGAAGAAATATTGCAACATTACCTTGTCACCCACCCAATCAGAAGACAAGATTAAGCTATTACTAAATggcttacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatcataggtacacttcaactatgacagacgaaattagaaaaaaaaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttacatctattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaatataagcagcatacctactgtgaagcatccctctacttcctccctcccttctccctgcctctccctccacttcctcccttctctccctccttgcctctccctccacttcctcccttctccctgcctctccctccacttcctctccctccacttcctccctgcctctccctccacctctccccttaCCCCTTGTTGAAGTTGATGTCATCTTCTATCCACTGTATGTGAACATGTTCCTGTCTGTCCTCCTGGTCGACCAGGCCACAGGTGATACTGAAGTCCTTCATGTCCCTCAGGGCTTGCCGTAGAGCGTCCATAGTCTCTCCTGTGATCTGCACCATCACACCGTCTATAGGGGAACAACAGGTATAtcaccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863208 lncRNA upstream 24243 88903461 ~ 88903833 (+) True LOC118965580
TU863207 lncRNA upstream 24318 88902880 ~ 88903758 (+) False LOC118965580
TU863242 lncRNA upstream 31887 88895949 ~ 88896189 (+) True G759608
TU863206 lncRNA upstream 65014 88862022 ~ 88863062 (+) True G759577
TU863229 lncRNA upstream 66511 88861079 ~ 88861565 (+) False G759598
TU863266 lncRNA downstream 11061 88940107 ~ 88944442 (+) True G759630
TU863272 lncRNA downstream 26411 88955457 ~ 88955763 (+) True G759636
TU863286 lncRNA downstream 46572 88975618 ~ 88976978 (+) True G759642
TU863332 lncRNA downstream 78967 89008013 ~ 89008991 (+) False G759668
TU863333 lncRNA downstream 78967 89008013 ~ 89008991 (+) False G759668
XR_005052997.1 mRNA upstream 24242 88886834 ~ 88903834 (+) False LOC118965580
XM_036986673.1 mRNA upstream 260756 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 260756 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 264695 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 265118 88646400 ~ 88662958 (+) False LOC110510805
XM_021614153.2 mRNA downstream 145578 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 145579 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 165790 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 165790 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA downstream 165790 89094836 ~ 89113049 (+) False fubp1
TU863230 other upstream 66248 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 66248 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 226657 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 227001 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 817776 88109006 ~ 88110300 (+) True G759031
TU863313 other downstream 151519 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 151519 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 638957 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 767374 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1231224 90160270 ~ 90208959 (+) False G760623

Expression Profile