RNA id: TU863988


Basic Information

Item Value
RNA id TU863988
length 1243
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G760147
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88975087 ~ 88977036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTACCCAGTACCAACTACCTAGTACCAACTACCAAGTAGCAACTCAGGACCCCACCTACTACCTAGTACCAACTACCCAGTACCAACTCAGTATCCCACCTACTACCCAGTACCAAATCAGTACCACACCTACTACCCAATACCAACTCAGTACCCCACCTGTTATCCAGTACCCCACCTACTATCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTACCCAGTACCAACTCAGTATCCCACCTACTATCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTCAGTACCCCACCAACTACCCAGTACCAACTACCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTACCCAGTACCAACTCAGTATCCCACGTACTATCCAGTACCAACTCAGTACCACACCTACTACCCAGTACCAACTCAGTACCCCACCTGTTATCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTCAGTACCCCACCAACTACCCAGTACCAACTACCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTCAGTACCCCACCTACTATCCAGTACCAACTCAGTACACCACCTACTACCCAGTGCCCAAACCCTCTATCATGTGGGCTCAAACAGGGGCCTGTTCAGGAAGATGTAATGTTACAGAACTTTCAGCTAAAATAAATGAAACGTATAGAACAGATATGTCTTGTCAAATGCAATAGGGAATCATGTCTGCTCTATCCATTCTTGATATTGATATCTGTGACGTTCAGAACGTTTCACATTTAACTGAATACACCCCGGACCTCTCTGTTACGGTGAAACTGTTGTTAAAGAAACGACCGTCATCGTCTGGTATTTTTAACCTCAGAGAAACCGACCTGGGCTCTGTCCCAAATGCCTCCCTATTCATAGTTCGCTACTTTTAACGAGAGCCCCGTGTAGGGAATTAGGGGAGGCCATTTTGGACAGAAGCCCAGTGTACCAACGCCATAGCAACAGTACGTGTATTTTAACAGGCTGTCACATGGTACTCTTTGCCTCTAGTACTATTACAGTGAATAAATAAGAGTCTCATTTCGAACGCACCTTTACAATCAGCAACAGTTGGCAGTCGAACATCCCAGAAGGTTTAAATGGCCCTTACTATAGCATGACGAACACATTCCAACCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863950 lncRNA downstream 3732 88955450 ~ 88971355 (-) True LOC110530883
TU863981 lncRNA downstream 20066 88954674 ~ 88955021 (-) True G760141
TU863963 lncRNA downstream 66835 88908005 ~ 88908252 (-) True G760125
TU863941 lncRNA downstream 71333 88903428 ~ 88903754 (-) True G760103
TU863962 lncRNA downstream 72298 88901782 ~ 88902789 (-) True G760124
TU864003 lncRNA upstream 30212 89007248 ~ 89007899 (-) True G760157
TU864008 lncRNA upstream 30980 89008016 ~ 89009423 (-) False G760158
TU864011 lncRNA upstream 30980 89008016 ~ 89009423 (-) True G760158
TU864069 lncRNA upstream 113424 89090460 ~ 89094398 (-) True G760191
TU864047 lncRNA upstream 135610 89112646 ~ 89118302 (-) False G760181
XM_036986702.1 mRNA downstream 3278 88923723 ~ 88971809 (-) False LOC110530883
XM_036986703.1 mRNA downstream 3403 88923723 ~ 88971684 (-) False LOC110530883
XM_036986704.1 mRNA downstream 3403 88923723 ~ 88971684 (-) False LOC110530883
XM_036986705.1 mRNA downstream 3403 88923723 ~ 88971684 (-) False LOC110530883
XM_036986706.1 mRNA downstream 3403 88923723 ~ 88971684 (-) False LOC110530883
XM_036986709.1 mRNA upstream 14197 88991233 ~ 89060503 (-) True LOC110530871
XM_036986710.1 mRNA upstream 88222 89065258 ~ 89073172 (-) True LOC110530869
XM_036986716.1 mRNA upstream 149432 89126468 ~ 89148693 (-) False miga1
XM_036986715.1 mRNA upstream 149432 89126468 ~ 89148695 (-) True miga1
XM_036986723.1 mRNA upstream 375674 89352710 ~ 89408042 (-) False LOC118965582
TU863903 other downstream 143359 88828133 ~ 88831728 (-) False LOC110530888
TU863905 other downstream 143359 88828133 ~ 88831728 (-) False LOC110530888
TU863908 other downstream 143999 88828133 ~ 88831088 (-) False LOC110530888
TU863898 other downstream 144140 88828133 ~ 88830947 (-) False LOC110530888
TU864029 other upstream 40013 89017049 ~ 89017979 (-) True G760165
TU864056 other upstream 102262 89079298 ~ 89081345 (-) True G760182
TU864071 other upstream 122808 89099844 ~ 89102382 (-) True G760192
TU864226 other upstream 354245 89331281 ~ 89332776 (-) True G760306
TU864256 other upstream 396849 89373885 ~ 89407502 (-) True LOC118965582

Expression Profile