RNA id: TU863333


Basic Information

Item Value
RNA id TU863333
length 441
lncRNA type intronic
GC content 0.52
exon number 3
gene id G759668
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89008013 ~ 89008991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttattggcagagagggttTGAGTGGGGAGGGAACCTAGCTGTTATTGGTAGAGAGGGTCTGAGTGGGAAGGGAACCTAGTTGTTATTGGTAGAGAGGGTCTGAGTGggggagggaacctagctgttattggcagagagggtctgagtggggagggaacctagctgttattggcagagagggtctgagtggggagggaacctagttgttattggcagagagggtcTGAGTGGGGCGGGaacctagctgttattggcagagagggtctgagtggggagggaacctagttgttattggcagagagggtctgagtggggagggaacctagctgttattggcagagagGGTCTGAGTGGAGGAGGGAACCTAGCTGTTATTGGTAGAGAGGGTCTGAGTGGGACAATTtcccagtattattccaacctcatagtgtggaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863286 lncRNA upstream 31035 88975618 ~ 88976978 (+) True G759642
TU863272 lncRNA upstream 52250 88955457 ~ 88955763 (+) True G759636
TU863266 lncRNA upstream 63571 88940107 ~ 88944442 (+) True G759630
TU863254 lncRNA upstream 78967 88928076 ~ 88929046 (+) True G759618
TU863208 lncRNA upstream 104180 88903461 ~ 88903833 (+) True LOC118965580
TU863345 lncRNA downstream 9180 89018171 ~ 89018766 (+) True G759678
TU863349 lncRNA downstream 33696 89042687 ~ 89137931 (+) False G759680
TU863350 lncRNA downstream 33696 89042687 ~ 89137931 (+) False G759680
TU863352 lncRNA downstream 39222 89048213 ~ 89048777 (+) True G759682
TU863315 lncRNA downstream 70932 89079923 ~ 89139486 (+) False slc25a24l
XR_005052997.1 mRNA upstream 104179 88886834 ~ 88903834 (+) False LOC118965580
XM_036986673.1 mRNA upstream 340693 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 340693 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 344632 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 345055 88646400 ~ 88662958 (+) False LOC110510805
XM_021614153.2 mRNA downstream 65633 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 65634 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 85845 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 85845 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA downstream 85845 89094836 ~ 89113049 (+) False fubp1
TU863230 other upstream 146185 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 146185 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 306594 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 306938 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 897713 88109006 ~ 88110300 (+) True G759031
TU863313 other downstream 71574 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 71574 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 559012 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 687429 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1151279 90160270 ~ 90208959 (+) False G760623

Expression Profile