RNA id: TU863345



Basic Information


Item Value
RNA id TU863345
length 479
lncRNA type intronic
GC content 0.44
exon number 2
gene id G759678
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89018171 ~ 89018766 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tatatacacagggtaccagtactgagtcgatgtgcaggggtacgaggtaataacttggttatatacacagggtaccagtactgagtcgatgtgcaggggtacgaggtaataacttggttatatacacagggtaccagtactgagtcgatgtgcaggggtacgaggtaataacttggttatatacacagggtaccagtactgagtcgatgtgcaggggtacgaggtaataacttggctatatatacagggtaccagtactgagtcgatgtacggggtatgaggtaataacatggctatatatacagggtaccagtactgagtcgatgtacagggtatgaggtaataacatggctatatatacagggtaccagtactgagtcgatgtgcagggtatgaggtaataacatggctatatatacagggtaccagtactgagtcgatgtacagggtatgaggtaataacatggctatatatacag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863332 lncRNA upstream 9180 89008013 ~ 89008991 (+) False G759668
TU863333 lncRNA upstream 9180 89008013 ~ 89008991 (+) False G759668
TU863334 lncRNA upstream 9180 89008013 ~ 89008991 (+) False G759668
TU863335 lncRNA upstream 9180 89008013 ~ 89008991 (+) True G759668
TU863286 lncRNA upstream 41193 88975618 ~ 88976978 (+) True G759642
TU863349 lncRNA downstream 23921 89042687 ~ 89137931 (+) False G759680
TU863350 lncRNA downstream 23921 89042687 ~ 89137931 (+) False G759680
TU863352 lncRNA downstream 29447 89048213 ~ 89048777 (+) True G759682
TU863315 lncRNA downstream 61157 89079923 ~ 89139486 (+) False slc25a24l
TU863348 lncRNA downstream 118831 89137597 ~ 89137931 (+) True G759680
XR_005052997.1 mRNA upstream 114337 88886834 ~ 88903834 (+) False LOC118965580
XM_036986673.1 mRNA upstream 350851 88646402 ~ 88667320 (+) False LOC110510805
XM_036986672.1 mRNA upstream 350851 88646403 ~ 88667320 (+) True LOC110510805
XM_036986675.1 mRNA upstream 354790 88646402 ~ 88663381 (+) False LOC110510805
XM_036986676.1 mRNA upstream 355213 88646400 ~ 88662958 (+) False LOC110510805
XM_021614153.2 mRNA downstream 55858 89074624 ~ 89094403 (+) False slc25a24l
XM_021614152.2 mRNA downstream 55859 89074625 ~ 89094403 (+) False slc25a24l
XM_036986711.1 mRNA downstream 76070 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA downstream 76070 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA downstream 76070 89094836 ~ 89113049 (+) False fubp1
TU863230 other upstream 156343 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 156343 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 316752 88697974 ~ 88701419 (+) False G759556
TU863172 other upstream 317096 88697974 ~ 88701075 (+) False G759556
TU862468 other upstream 907871 88109006 ~ 88110300 (+) True G759031
TU863313 other downstream 61799 89080565 ~ 89094340 (+) False slc25a24l
TU863314 other downstream 61799 89080565 ~ 89094394 (+) True slc25a24l
TU863518 other downstream 549237 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 677654 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1141504 90160270 ~ 90208959 (+) False G760623

Expression Profile