RNA id: TU863348


Basic Information

Item Value
RNA id TU863348
length 276
lncRNA type intronic
GC content 0.43
exon number 2
gene id G759680
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89042687 ~ 89137931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGgtaaacagtgaaatgcttcccaacaatacagagagaaatCGAAAGATAACGAGGAATAAaaacaatgagtaacgataaacttggttatatacatggGTACAAAGTCCAtgagcaggggtacgaggtaataacttggctatgtacacagggtaccagtacagagtccatgagcaggggtacgaggtaattgaggtagatacatgGGTAGGGATAAAGTGAGTAGACGACAGGATAGATAAACCGTAACAGCAGGgtttgtcagaggaaggccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863352 lncRNA upstream 88820 89048213 ~ 89048777 (+) True G759682
TU863345 lncRNA upstream 118831 89018171 ~ 89018766 (+) True G759678
TU863333 lncRNA upstream 128606 89008013 ~ 89008991 (+) False G759668
TU863388 lncRNA downstream 17085 89155016 ~ 89155613 (+) True G759716
TU863395 lncRNA downstream 42744 89180675 ~ 89181326 (+) True G759723
TU863309 lncRNA downstream 83069 89221000 ~ 89223706 (+) True usp33
TU863421 lncRNA downstream 102528 89240459 ~ 89241436 (+) True G759741
TU863426 lncRNA downstream 108394 89246325 ~ 89247348 (+) False G759745
XM_036986711.1 mRNA upstream 24548 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA upstream 24548 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA upstream 24548 89094836 ~ 89113049 (+) False fubp1
XM_036986714.1 mRNA upstream 24548 89094836 ~ 89113049 (+) True fubp1
XM_021614153.2 mRNA upstream 43194 89074624 ~ 89094403 (+) False slc25a24l
XM_036986719.1 mRNA downstream 11059 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA downstream 11088 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA downstream 12982 89150913 ~ 89223706 (+) False usp33
XM_036986720.1 mRNA downstream 87158 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA downstream 88196 89226127 ~ 89291341 (+) True LOC110530860
TU863314 other upstream 43203 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 43257 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 275769 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 275769 88861279 ~ 88861828 (+) True G759598
TU863171 other upstream 436178 88697974 ~ 88701419 (+) False G759556
TU863518 other downstream 430072 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 558489 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1022339 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 1023383 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1236156 90374087 ~ 90389077 (+) False G760718

Expression Profile