RNA id: TU863388



Basic Information


Item Value
RNA id TU863388
length 202
lncRNA type intronic
GC content 0.52
exon number 2
gene id G759716
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89155016 ~ 89155613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTGTGTTAGAGCAGTGTTGTCAGTGTGTTAGAGCAGTGTGTTAGTGCAGTGTGGCCAGTGTGTTAGAGCAGTGTGTTAGAGCAGTGTGGCCAGTGTGTTAGAGCAGTGTGGCCAAGCAGTGTGTTAGAGCAGTGTGTTAGAGCTGGGTGTTAGAGCTGGGTGGCCAGTGTGTTAGAGCTGGGTGGCCAGTGTGTTAGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863315 lncRNA upstream 15530 89079923 ~ 89139486 (+) False slc25a24l
TU863349 lncRNA upstream 17085 89042687 ~ 89137931 (+) False G759680
TU863350 lncRNA upstream 17085 89042687 ~ 89137931 (+) False G759680
TU863348 lncRNA upstream 17085 89137597 ~ 89137931 (+) True G759680
TU863352 lncRNA upstream 106239 89048213 ~ 89048777 (+) True G759682
TU863395 lncRNA downstream 25062 89180675 ~ 89181326 (+) True G759723
TU863309 lncRNA downstream 65387 89221000 ~ 89223706 (+) True usp33
TU863421 lncRNA downstream 84846 89240459 ~ 89241436 (+) True G759741
TU863426 lncRNA downstream 90712 89246325 ~ 89247348 (+) False G759745
TU863428 lncRNA downstream 90712 89246325 ~ 89247266 (+) True G759745
XM_036986711.1 mRNA upstream 41967 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA upstream 41967 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA upstream 41967 89094836 ~ 89113049 (+) False fubp1
XM_036986714.1 mRNA upstream 41967 89094836 ~ 89113049 (+) True fubp1
XM_021614152.2 mRNA upstream 60613 89074625 ~ 89094403 (+) False slc25a24l
XM_036986720.1 mRNA downstream 69476 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA downstream 70514 89226127 ~ 89291341 (+) True LOC110530860
XR_005052998.1 mRNA downstream 106001 89261614 ~ 89263601 (+) False LOC118965581
XR_005052999.1 mRNA downstream 106001 89261614 ~ 89263950 (+) True LOC118965581
XM_036986722.1 mRNA downstream 141339 89296952 ~ 89321553 (+) True pigk
TU863314 other upstream 60622 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 60676 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 293188 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 293188 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 453941 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 412390 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 540807 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 1004657 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 1005701 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1218474 90374087 ~ 90389077 (+) False G760718

Expression Profile