RNA id: TU863395


Basic Information

Item Value
RNA id TU863395
length 320
lncRNA type intronic
GC content 0.46
exon number 2
gene id G759723
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89180675 ~ 89181326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAAGACACTGCAGTAGGAGAATGGGCAGAAAGACACTGCAGTAGTATTGTAGGCAGAAAGACACTGCAGTAGTAATGTGGGCAGAAAGACACTGCAGTAGTAATGTGGGCAGAAAGACACTGCAGTAGTAATGTGGGCAGAAAGACACTGCGGTAGTAATGTAGGCAGAAAGACACTGCGGTAGTAATGTAGGCAGAAAGACACTGCAGTAGTAATGTGGGCAGAACAATACTGCAGTAGTAATGTGGgcagaaagacactgcagtagtaatgtaggcagacactgcagtagtaatgtaggCCGAAATACactgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863388 lncRNA upstream 25062 89155016 ~ 89155613 (+) True G759716
TU863315 lncRNA upstream 41189 89079923 ~ 89139486 (+) False slc25a24l
TU863349 lncRNA upstream 42744 89042687 ~ 89137931 (+) False G759680
TU863350 lncRNA upstream 42744 89042687 ~ 89137931 (+) False G759680
TU863348 lncRNA upstream 42744 89137597 ~ 89137931 (+) True G759680
TU863309 lncRNA downstream 39674 89221000 ~ 89223706 (+) True usp33
TU863421 lncRNA downstream 59133 89240459 ~ 89241436 (+) True G759741
TU863426 lncRNA downstream 64999 89246325 ~ 89247348 (+) False G759745
TU863428 lncRNA downstream 64999 89246325 ~ 89247266 (+) True G759745
TU863430 lncRNA downstream 67154 89248480 ~ 89249661 (+) False G759746
XM_036986711.1 mRNA upstream 67626 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA upstream 67626 89094836 ~ 89113049 (+) False fubp1
XM_036986713.1 mRNA upstream 67626 89094836 ~ 89113049 (+) False fubp1
XM_036986714.1 mRNA upstream 67626 89094836 ~ 89113049 (+) True fubp1
XM_021614152.2 mRNA upstream 86272 89074625 ~ 89094403 (+) False slc25a24l
XM_036986720.1 mRNA downstream 43763 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA downstream 44801 89226127 ~ 89291341 (+) True LOC110530860
XR_005052998.1 mRNA downstream 80288 89261614 ~ 89263601 (+) False LOC118965581
XR_005052999.1 mRNA downstream 80288 89261614 ~ 89263950 (+) True LOC118965581
XM_036986722.1 mRNA downstream 115626 89296952 ~ 89321553 (+) True pigk
TU863314 other upstream 86281 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 86335 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 318847 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 318847 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 479600 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 386677 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 515094 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 978944 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 979988 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1192761 90374087 ~ 90389077 (+) False G760718

Expression Profile