RNA id: TU863421


Basic Information

Item Value
RNA id TU863421
length 542
lncRNA type intronic
GC content 0.34
exon number 2
gene id G759741
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89240459 ~ 89241436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTACTACATGTAATTCTATGGTTTTGTCTAATAAATGACAatgtgtaactttttgggcgacccgaccaaattcacatagaaatgttatttttatatttttaaacctgttgtagtcccgttcttaagtttagtttgtgtcttttactttaggttttgtacaccagcttcaaacagcggAAAATACTATTTGTGGTCATAGATTCTCTCTATGGTTTAaatggttcaatgattctcagtggtttaaatggttcaatgattctcagtggtttagatgaTTCAATGATTCTCTCTATGATTTAaatggttcaatgattctcagtggtttagatggttcaatgattctctCTATGGTTTAaatggttcaatgattctcagtggtttagatggttcaatgattctcagtggtttagatggttcaatgattctcagtggtttagatggtgcaatgattctcagtggtttagatggtgcaatgattctcagtggtttagatggtgcaatgattctcagtggtttaaatggttcaatgattctcagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863309 lncRNA upstream 16753 89221000 ~ 89223706 (+) True usp33
TU863395 lncRNA upstream 59133 89180675 ~ 89181326 (+) True G759723
TU863388 lncRNA upstream 84846 89155016 ~ 89155613 (+) True G759716
TU863315 lncRNA upstream 100973 89079923 ~ 89139486 (+) False slc25a24l
TU863348 lncRNA upstream 102528 89137597 ~ 89137931 (+) True G759680
TU863426 lncRNA downstream 4889 89246325 ~ 89247348 (+) False G759745
TU863428 lncRNA downstream 4889 89246325 ~ 89247266 (+) True G759745
TU863430 lncRNA downstream 7044 89248480 ~ 89249661 (+) False G759746
TU863431 lncRNA downstream 7044 89248480 ~ 89249661 (+) False G759746
TU863432 lncRNA downstream 7044 89248480 ~ 89249661 (+) False G759746
XM_036986719.1 mRNA upstream 16753 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA upstream 16753 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA upstream 16753 89150913 ~ 89223706 (+) False usp33
XM_036986711.1 mRNA upstream 127410 89094836 ~ 89113049 (+) False fubp1
XM_036986712.1 mRNA upstream 127410 89094836 ~ 89113049 (+) False fubp1
XR_005052998.1 mRNA downstream 20178 89261614 ~ 89263601 (+) False LOC118965581
XR_005052999.1 mRNA downstream 20178 89261614 ~ 89263950 (+) True LOC118965581
XM_036986722.1 mRNA downstream 55516 89296952 ~ 89321553 (+) True pigk
XM_036986724.1 mRNA downstream 318702 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 549474 89790910 ~ 89837790 (+) False yipf1
TU863314 other upstream 146065 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 146119 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 378631 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 378631 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 539384 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 326567 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 454984 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 918834 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 919878 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1132651 90374087 ~ 90389077 (+) False G760718

Expression Profile