RNA id: TU863431



Basic Information


Item Value
RNA id TU863431
length 903
lncRNA type intronic
GC content 0.48
exon number 2
gene id G759746
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89248480 ~ 89249661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTTAGTAATGACAGGGTAGTTGGTCTGTGGTGGTAGTGGGGGGTTAGTAATGACAGGGTAGTTAGCCTGTGGTGATAATGGGGGTTAGTGATGACAGGGTAGTTGGTCTGTTGGTCCATTAATTTCCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtacCTCATTTCCCCATAGAgtggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATTTccccataggaatggctgaacgaaccagaggtaactcatttcCCCATAGGAgtggctgaacgaaccagaggtatCTCATCTCTGCGTTTCAGGAGCTCTATTGCCTTTCAATTTCAGGGTGTGACTTTAAATTCCAAGCCAAGACTTGAAAAATCCTAATTGAAAACAGCAGTTTTCATATCTTTAATAGGAATAGGAATAGAAACCCGACCGACTGATTCTAAAACAACCCTCCTATAAAATCCATCCTTGATGGTGCCCAGCTGAGAGTTCAGGCTGAGGGTACCAAGGTTTGGAAAATAGAACTGATCCTTAGGGAGTATCATGTGACATATATTGGTAATATGATTCATGTTGCCAGCTAGAGTGAGATTACTGTGATGAAGAAACTACTGTCGTTAGCTCAGATGAATGCAGGGATCGGAGgttgcatcccaaacggcaccctattccatagtgcactactggcccTGGTCCAGAGTAGTGCAccgtgtagggaatagggggccgtttgggacacagccagCAGTGCTGGGCAGTCAGGTCCTGTTGGGTTGGGTTgaactgggctgggctggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863426 lncRNA upstream 1132 89246325 ~ 89247348 (+) False G759745
TU863428 lncRNA upstream 1214 89246325 ~ 89247266 (+) True G759745
TU863421 lncRNA upstream 7044 89240459 ~ 89241436 (+) True G759741
TU863309 lncRNA upstream 24774 89221000 ~ 89223706 (+) True usp33
TU863395 lncRNA upstream 67154 89180675 ~ 89181326 (+) True G759723
TU863323 lncRNA downstream 15087 89264748 ~ 89266944 (+) True G759661
TU863446 lncRNA downstream 48718 89298379 ~ 89300155 (+) True G759755
TU863451 lncRNA downstream 70160 89319821 ~ 89652495 (+) True G759759
TU863458 lncRNA downstream 86346 89336007 ~ 89337833 (+) True G759765
TU863466 lncRNA downstream 103046 89352707 ~ 89354993 (+) False G759772
XM_036986719.1 mRNA upstream 24774 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA upstream 24774 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA upstream 24774 89150913 ~ 89223706 (+) False usp33
XM_036986713.1 mRNA upstream 135431 89094836 ~ 89113049 (+) False fubp1
XR_005052998.1 mRNA downstream 11953 89261614 ~ 89263601 (+) False LOC118965581
XR_005052999.1 mRNA downstream 11953 89261614 ~ 89263950 (+) True LOC118965581
XM_036986722.1 mRNA downstream 47291 89296952 ~ 89321553 (+) True pigk
XM_036986724.1 mRNA downstream 310477 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 541249 89790910 ~ 89837790 (+) False yipf1
TU863314 other upstream 154086 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 154140 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 386652 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 386652 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 547405 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 318342 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 446759 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 910609 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 911653 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1124426 90374087 ~ 90389077 (+) False G760718

Expression Profile