RNA id: TU863323



Basic Information


Item Value
RNA id TU863323
length 604
lncRNA type intronic
GC content 0.41
exon number 2
gene id G759661
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89264748 ~ 89266944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACtataacaccctgatctgggtacaggtcagagaaacaggttaatataacaccctgatctgggtacaggttaatataacactctgatctgggtacaggttaatataacactctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatgtaacaccctgatctgggtacaggtcaGAGAAACAGGTTAATGTAACActctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacactctgatctgggtacaggtcagagaaacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaataatacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctTATCTGGGTACAGGTCAGAGAAACAGGTTAATCTAACActctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggttaatataacaccctgatctgggtacaggtta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863430 lncRNA upstream 15087 89248480 ~ 89249661 (+) False G759746
TU863431 lncRNA upstream 15087 89248480 ~ 89249661 (+) False G759746
TU863432 lncRNA upstream 15087 89248480 ~ 89249661 (+) False G759746
TU863434 lncRNA upstream 15087 89248480 ~ 89249661 (+) True G759746
TU863426 lncRNA upstream 17400 89246325 ~ 89247348 (+) False G759745
TU863446 lncRNA downstream 31435 89298379 ~ 89300155 (+) True G759755
TU863451 lncRNA downstream 52877 89319821 ~ 89652495 (+) True G759759
TU863458 lncRNA downstream 69063 89336007 ~ 89337833 (+) True G759765
TU863466 lncRNA downstream 85763 89352707 ~ 89354993 (+) False G759772
TU863467 lncRNA downstream 85763 89352707 ~ 89354993 (+) True G759772
XR_005052999.1 mRNA upstream 798 89261614 ~ 89263950 (+) True LOC118965581
XR_005052998.1 mRNA upstream 1147 89261614 ~ 89263601 (+) False LOC118965581
XM_036986719.1 mRNA upstream 41042 89148990 ~ 89223706 (+) False usp33
XM_036986718.1 mRNA upstream 41042 89149019 ~ 89223706 (+) False usp33
XM_036986717.1 mRNA upstream 41042 89150913 ~ 89223706 (+) False usp33
XM_036986722.1 mRNA downstream 30008 89296952 ~ 89321553 (+) True pigk
XM_036986724.1 mRNA downstream 293194 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 523966 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 524010 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 586522 89853466 ~ 89854375 (+) True zgc:113691
TU863314 other upstream 170354 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 170408 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 402920 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 402920 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 563673 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 301059 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 429476 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 893326 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 894370 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1107143 90374087 ~ 90389077 (+) False G760718

Expression Profile