RNA id: TU863458


Basic Information

Item Value
RNA id TU863458
length 1587
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G759765
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89336007 ~ 89337833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttccgaagacgACTGCCTTCTGAATAACCGGTCTGGGCACTTTCCAATCAGCTTCAGGTAACTTTGTAAGGCTTGTAGTGACGTCTTCTTCTCTGTCACGGTAACTTTGTAAGGCTTGTAGTGACTTCATCTTCTTCTCTGTCACGGTAACTTTGTAAGGCTTGTAGTGACTTCATCTTCTTCTCTGTCACGCCCAACCTGTGCAGTTCAGTGTTGCTTATCCAATGTTCACTAGATATATCAATGTAACACAATGTTGAATAACActttttattaaaaaataaaaactattaTTTGTGGCGAAGTACTAATGGAGTTCATTTCAACTGATgactttaaaaataaaatacagaggCACAATTACAAAGTGATAAATTATAAAGGTAATAACGTATGTTCTTCACAATCGAAGACAAAATACAGGTTGACTTGTTGGCTACATTTACAGTACACTTTGAAAAACTACCGTCAAACAGCTGTTTTTAATATAGCGTCTGCTCTGAAACACCTCATCCATAATGTATTGTGGTAAATGAGTTTACACACGTTTACCCAGTTTCTAATTCTGTACTGACTCTTTCTACTCAGCGAAGATTCTGGTCATTGACTACAATTACTCTTTCATCTTTCACACTTTAATATTTAACTATTTTATTGTGCAGTGCAGTGTTGTTTTTCTGAAATTGAGTATTGAACTAAGCCAAGCGTTATAACATAcaaaacatactgtagctacataacacagggatcatagcttccacctggattcacctggtcagtctatgtcatggaaatagctGATGTCCTTGATGTTTGGCACATTCATGTAGTATTTCCATCCTCCGGGGAATTAGACACAGGTCCTGGTGCAGCCTAACCTCCAGCTCCAGCCTCAGCTCCATCCGCAACCCAACCTCCAGCCTCAGCACCATCCTCAGTCTAACCTTCAGATCTGCCCAACCTCCAGCTACAGCCTAGCTCCAACTCCACTCCCATCTACAGGcccatctccatctccagGCCCTTCTCCATCTCCAGGCCCATCTCCAGGCCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCTTCTCCATCTCCAGGCCCATCTCGAGCTCTATGCCCAGCTGCAAACAGATattctaaaataaaaaaaaatgtgctcCATCTTTTCATAATCAGCAGACACATTGACACAGAAAAAGACAATAACTAGTAGTGGATGGCAATATACATGGCAAAGCCCTTTAGTGAGAGCTGTGGCCGCAATGGGTATCTGATCAAAAGGAATGTCCTGTTTGTTTAGACCAGGCCTGGGTAGTGattttccatggagggccacattAGAATAGATTTTTTGCCTTCCTGGGCCAGAATCCTATTACAGGATGATACATCATGTGAATGACTGTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863446 lncRNA upstream 35852 89298379 ~ 89300155 (+) True G759755
TU863323 lncRNA upstream 69063 89264748 ~ 89266944 (+) True G759661
TU863431 lncRNA upstream 86346 89248480 ~ 89249661 (+) False G759746
TU863466 lncRNA downstream 14874 89352707 ~ 89354993 (+) False G759772
TU863467 lncRNA downstream 14874 89352707 ~ 89354993 (+) True G759772
TU863480 lncRNA downstream 46627 89384460 ~ 89384998 (+) True G759785
TU863486 lncRNA downstream 60399 89398232 ~ 89399847 (+) True G759790
TU863494 lncRNA downstream 78559 89416392 ~ 89418335 (+) True G759798
XM_036986722.1 mRNA upstream 14454 89296952 ~ 89321553 (+) True pigk
XM_036986720.1 mRNA upstream 44666 89225089 ~ 89291341 (+) False LOC110530860
XM_036986721.1 mRNA upstream 44666 89226127 ~ 89291341 (+) True LOC110530860
XR_005052999.1 mRNA upstream 72057 89261614 ~ 89263950 (+) True LOC118965581
XR_005052998.1 mRNA upstream 72406 89261614 ~ 89263601 (+) False LOC118965581
XM_036986724.1 mRNA downstream 222305 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 453077 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 453121 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 515633 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 523988 89861821 ~ 89911594 (+) False ndc1
TU863314 other upstream 241613 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 241667 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 474179 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 474179 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 634932 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 230170 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 358587 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 822437 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 823481 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 1036254 90374087 ~ 90389077 (+) False G760718

Expression Profile