RNA id: TU863494


Basic Information

Item Value
RNA id TU863494
length 1329
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G759798
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89416392 ~ 89418335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTAGAAGACTGTAAAAGAATCTGGCAACACGATGCAGGCTGGAAGATGTGCCAaggagacagaacagaacagattccaATGCTACGCGAAGGGCTGACCAAGCAGAACACACTTCAGTCAGGGAGGAAATCTAAGACGGAATGACTATACAACTGTAAATACACTACAACGGGCCAAGATTCGAACAAATtcaattgtattggtcacgtacacatatttagcagatgttattgcgggtgtagcgaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgtttctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgtttctagctccaacagagcagtagtatctaactaaatgcttggtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagagcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaactaaatgcttgtgttcctagctccaacagtgcagtagtatgtaacaatttacaaaaatacaaacatctaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863486 lncRNA upstream 16545 89398232 ~ 89399847 (+) True G759790
TU863480 lncRNA upstream 31394 89384460 ~ 89384998 (+) True G759785
TU863466 lncRNA upstream 61399 89352707 ~ 89354993 (+) False G759772
TU863467 lncRNA upstream 61399 89352707 ~ 89354993 (+) True G759772
TU863458 lncRNA upstream 78559 89336007 ~ 89337833 (+) True G759765
TU863503 lncRNA downstream 14522 89432857 ~ 89433399 (+) True G759805
TU863511 lncRNA downstream 79634 89497969 ~ 89503002 (+) True G759813
TU863546 lncRNA downstream 171002 89589337 ~ 89604334 (+) True G759845
TU863549 lncRNA downstream 172496 89590831 ~ 89605556 (+) False G759846
TU863550 lncRNA downstream 172496 89590831 ~ 89605556 (+) True G759846
XM_036986722.1 mRNA upstream 94839 89296952 ~ 89321553 (+) True pigk
XM_036986720.1 mRNA upstream 125051 89225089 ~ 89291341 (+) False LOC110530860
XM_036986724.1 mRNA downstream 141803 89560138 ~ 89575164 (+) False LOC118965583
XM_021614193.2 mRNA downstream 372575 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 372619 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 435131 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 443486 89861821 ~ 89911594 (+) False ndc1
TU863314 other upstream 321998 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 322052 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 554564 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 554564 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 715317 88697974 ~ 88701075 (+) False G759556
TU863518 other downstream 149668 89568003 ~ 89659347 (+) True LOC118965583
TU863611 other downstream 278085 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 741935 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 742979 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 955752 90374087 ~ 90389077 (+) False G760718

Expression Profile