RNA id: TU863550


Basic Information

Item Value
RNA id TU863550
length 1461
lncRNA type read_through
GC content 0.46
exon number 3
gene id G759846
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89590831 ~ 89605556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCACTGGGCAGACGGccattcaacatctattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGccattcaacatctattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGCCATTCAACATccattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGCCATTCAACATccattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGCCATTCAACATccattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGccattcaacatctattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGCCATTCAACATccattccatgttggttcaaaaCAAAAGCTGTTCTGATGACATGTCACCTCCCACTGGGCAGACGGccattcaacatctattccatgttggttcaaagtcatttcattgaaatgacgtggaaacaacgctgattcaaccagtgtgtgcccagtgggctgtaATCAGCATAAATAGTGTGTCAATTAAGTTCAATAATGTATTGTTTTTGGACATTCACAACAGATGGTATAATAGTGTATTATAGGACTTTTCTCAAGAGGGGTATGTACGTATTCTGGACccgagtgtgtcagtgtagatatgTACTCAATCACTTCGGCACTGTTGAACTGAATCAACCAACTGAATCAGCCAACTGAATCCACATAATTGAATCAACCAACTGAATCAGCCCTCTGAATCAACCGCAGTATGACTGTGAGAAGGTgctgattgagagagagacaatggactGTGTTACTGTATAACCTCCCTCATGTTGACAGTAATGTTGTACACTGAATTGACCGATACTCTGCGACAGCAAAGCAACGTATTGATCTATAGTAGAAATGGGTCCTGATGGCTGCTCTTCAACCCAACTCCCCTGCAGTACAGCACAGCTACTGGTCAGGTCCAGAAGGAAAGTCTTGATTCTTTCAGAGGAACTACTGCTAGTCCAGTTGGCTGTTTGTGAACACTACGGTGAGATGACTTTTCAGTCTAAAATGTTTGTTGTTCCAGTTGAGAGTTTTAAGATGCCTGAGTGAGTCCTGGAGAGGCCACAGAGTTAAACCCTATAATCCCTGAAGAGACAGGCTGGGTTCTGCAGTGGTTATTCACCCAGGGATAAGTGGGACTGGCTGGTCTCTACTACAGTAGGGTCCAGGTAACTCTGCCAACCGTAGTTCCTTAGTTGACCGTTGGTCTAGGCTGGTAAGAGTTGTCCTCGGAGATGTCCTGATCCTCGCTGCCCATCAGACCTGAGATGTAAGGCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863511 lncRNA upstream 87829 89497969 ~ 89503002 (+) True G759813
TU863503 lncRNA upstream 157432 89432857 ~ 89433399 (+) True G759805
TU863494 lncRNA upstream 172496 89416392 ~ 89418335 (+) True G759798
TU863486 lncRNA upstream 190984 89398232 ~ 89399847 (+) True G759790
TU863480 lncRNA upstream 205833 89384460 ~ 89384998 (+) True G759785
TU863568 lncRNA downstream 10407 89615963 ~ 89616763 (+) True G759857
TU863573 lncRNA downstream 16612 89622168 ~ 89622801 (+) True G759862
TU863583 lncRNA downstream 31277 89636833 ~ 89638330 (+) False G759869
TU863581 lncRNA downstream 31929 89637485 ~ 89638330 (+) False G759869
TU863584 lncRNA downstream 31929 89637485 ~ 89638330 (+) True G759869
XM_036986724.1 mRNA upstream 15667 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 269278 89296952 ~ 89321553 (+) True pigk
XM_036986721.1 mRNA upstream 299490 89226127 ~ 89291341 (+) True LOC110530860
XM_021614193.2 mRNA downstream 185354 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 185398 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 247910 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 256265 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 256266 89861822 ~ 89911594 (+) True ndc1
TU863314 other upstream 496437 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 496491 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 729003 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 729003 88861279 ~ 88861828 (+) True G759598
TU863172 other upstream 889756 88697974 ~ 88701075 (+) False G759556
TU863611 other downstream 90864 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 554714 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 555758 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 768531 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 791366 90396922 ~ 90400472 (+) True G760718

Expression Profile