RNA id: TU864390



Basic Information


Item Value
RNA id TU864390
length 342
lncRNA type intronic
GC content 0.48
exon number 2
gene id G760414
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89667517 ~ 89667892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtaccactaccagacccacacacatcagcagaagagactgcctagagtttAGCCTGTTTCCAAGATAGCCAGTGTagagaaaagagaatacacaccctataaaacccacatcacagcacaggggtaaccccacccagaatacctcatcagcacaggggtaaccccacccagaatacctcatcagcacaggggtaaccccacccagaatacctcatcagcacaggggtaaccccacccagaatacctcatcagcacaggggtaaccccacccagaatacctcatacaataataataataatggcagagcaattgaacagcaacttcatacaagaaagaaccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU864324 lncRNA downstream 48907 89552173 ~ 89618610 (-) True G760370
TU864369 lncRNA downstream 52437 89598967 ~ 89615080 (-) True G760396
TU864361 lncRNA downstream 63081 89589347 ~ 89604436 (-) True G760394
TU864347 lncRNA downstream 81082 89584118 ~ 89586435 (-) True G760389
TU864309 lncRNA downstream 129725 89537233 ~ 89537792 (-) True G760358
TU864394 lncRNA upstream 12716 89680608 ~ 89682198 (-) True G760417
TU864401 lncRNA upstream 23853 89691745 ~ 89692343 (-) True G760424
TU864403 lncRNA upstream 28793 89696685 ~ 89697080 (-) True G760426
TU864410 lncRNA upstream 53663 89721555 ~ 89721903 (-) True G760431
TU864217 lncRNA upstream 54546 89722438 ~ 89722804 (-) True G760298
XR_005053000.1 mRNA downstream 33175 89589337 ~ 89634342 (-) False LOC110530890
XR_005053001.1 mRNA downstream 33175 89589337 ~ 89634342 (-) False LOC110530890
XM_036986725.1 mRNA downstream 33175 89603509 ~ 89634342 (-) True LOC110530890
XM_036986727.1 mRNA downstream 33178 89603509 ~ 89634339 (-) False LOC110530890
XM_036986728.1 mRNA downstream 33186 89603509 ~ 89634331 (-) False LOC110530890
XM_036986740.1 mRNA upstream 55842 89723734 ~ 89770006 (-) False LOC110530894
XM_036986742.1 mRNA upstream 105723 89773615 ~ 89788034 (-) False LOC110530892
XM_036986741.1 mRNA upstream 108886 89776778 ~ 89788040 (-) False LOC110530892
XM_036986744.1 mRNA upstream 108886 89776778 ~ 89788042 (-) False LOC110530892
XM_036986743.1 mRNA upstream 108886 89776778 ~ 89790770 (-) False LOC110530892
TU864314 other downstream 132164 89534623 ~ 89535353 (-) True G760362
TU864256 other downstream 260015 89373885 ~ 89407502 (-) True LOC118965582
TU864226 other downstream 334741 89331281 ~ 89332776 (-) True G760306
TU864071 other downstream 565135 89099844 ~ 89102382 (-) True G760192
TU864056 other downstream 586172 89079298 ~ 89081345 (-) True G760182
TU865121 other upstream 672920 90340812 ~ 90341303 (-) True G760971
TU865237 other upstream 982504 90650396 ~ 90652740 (-) True G761034
TU865407 other upstream 1128255 90796147 ~ 90797574 (-) False G761176
TU865828 other upstream 1278587 90946479 ~ 90948106 (-) True G761467
TU865871 other upstream 1387855 91055747 ~ 91111937 (-) True G761504

Expression Profile