RNA id: TU863601



Basic Information


Item Value
RNA id TU863601
length 758
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G759884
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89688128 ~ 89688933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCACATATTCATTAGTGTACAGGTTCTTCCCCAGGCGTAGCTCTCCAAAGTTCCCACAACCAATCTTCTTCCCGACCCGAAAGTTAGGGCCCACCATGAGCACCCCGGAGTTGCTCCCCGAGCTGCGACTGCCGTGCCCCGACCGGCTCCCTCCCGTCTTTGAcatcctcttcccttcctctgcctccccctttcctcctcctcctcctctcttgtcAAAGTCCATAAGTTTGTGGTACCCTGGCCTCTCCACGATTACGCCACTGCCATGCAGTCCTCAGAGCCGCCAAAACATCCACCAGACCGTCAGGGGGGCgtggaggggaatggagaggtggagggagccAAATCACCACACAGTGTAGGGCTAGTACTGAATGTGTGAGTGTGAATATACTCTGTATGAGGCCTTCGGCTGATAACTACTAATCAAGTTAGCAACAGTAAGGGTAGAGATCAGGTGAACTGATGAGCCATCCTCttctgtgggtctctctctctctaaatcaccACCAGCATCAAAGCTGCATCTAAACCTAGGACTGGACTCACACTAGCTAACTAAGAAAGGCTATCCAAGCTAAAGGAAGAGAGGCTATCCTAGCTAAAGGAAGGAAGGTGCTCCTAGCTCCTGGCTGTGTGATTGATGTGGGCGTCGTCCTCCAGGGCCCACTCCTGGTGAGGTTGTGAAGGTGCAGTCATTCCCAGCGGTCTGATACACCTGGTGGAGCGGTTGGTTGGACAGACGGGCTAACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863590 lncRNA upstream 9026 89654779 ~ 89679102 (+) False G759873
TU863589 lncRNA upstream 19876 89655160 ~ 89668252 (+) True G759873
TU863451 lncRNA upstream 35633 89319821 ~ 89652495 (+) True G759759
TU863583 lncRNA upstream 49798 89636833 ~ 89638330 (+) False G759869
TU863581 lncRNA upstream 49798 89637485 ~ 89638330 (+) False G759869
TU863606 lncRNA downstream 2616 89691549 ~ 89692102 (+) True G759887
TU863620 lncRNA downstream 24258 89713191 ~ 89713407 (+) True G759901
TU863623 lncRNA downstream 30592 89719525 ~ 89719885 (+) True G759904
TU863624 lncRNA downstream 34807 89723740 ~ 89724053 (+) True G759905
TU863625 lncRNA downstream 35879 89724812 ~ 89726287 (+) True G759906
XM_036986724.1 mRNA upstream 112964 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 366575 89296952 ~ 89321553 (+) True pigk
XM_036986721.1 mRNA upstream 396787 89226127 ~ 89291341 (+) True LOC110530860
XM_021614193.2 mRNA downstream 101977 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 102021 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 164533 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 172888 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 172889 89861822 ~ 89911594 (+) True ndc1
TU863518 other upstream 28781 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 593734 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 593788 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 826300 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 826300 88861279 ~ 88861828 (+) True G759598
TU863611 other downstream 7487 89696420 ~ 89696907 (+) True G759892
TU864640 other downstream 471337 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 472381 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 685154 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 707989 90396922 ~ 90400472 (+) True G760718

Expression Profile