RNA id: TU863611



Basic Information


Item Value
RNA id TU863611
length 387
RNA type TUCP
GC content 0.52
exon number 3
gene id G759892
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89696420 ~ 89696907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACCAACCACAGCCTCctagtgacttggattacaggcacataaaaaaaggtggagggggagaggggaattaTCCAGGACAGAAAGTAGAATGGAAGTCGTGTTGAAAGCTGTATGTCATTTACTGCAGCTGCCTGCTCAGCGTCTgactgacggagttagaaaccaGAGCCCGTCTCATCCTACAGTACAGCTACTGGTCAGGTCCAGAAACCAGAGCCCGTCTCATCCTACAGTACAGCTACTGGTCAGGTCCAGAAACCAGAGCCCACCTCATCCTACAGTACAGCTACTGGTCAGGTCCAGAAACCAGAGCCCGTCTCATCCTACAGTACAgctactggtctgGTCCAGAAACCAGAGCCCACCTCATCCCACAGTACAGCTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863606 lncRNA upstream 4318 89691549 ~ 89692102 (+) True G759887
TU863601 lncRNA upstream 7487 89688128 ~ 89688933 (+) True G759884
TU863590 lncRNA upstream 17318 89654779 ~ 89679102 (+) False G759873
TU863589 lncRNA upstream 28168 89655160 ~ 89668252 (+) True G759873
TU863451 lncRNA upstream 43925 89319821 ~ 89652495 (+) True G759759
TU863620 lncRNA downstream 16284 89713191 ~ 89713407 (+) True G759901
TU863623 lncRNA downstream 22618 89719525 ~ 89719885 (+) True G759904
TU863624 lncRNA downstream 26833 89723740 ~ 89724053 (+) True G759905
TU863625 lncRNA downstream 27905 89724812 ~ 89726287 (+) True G759906
TU863666 lncRNA downstream 76565 89773472 ~ 89774266 (+) False G759937
XM_036986724.1 mRNA upstream 121256 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 374867 89296952 ~ 89321553 (+) True pigk
XM_036986720.1 mRNA upstream 405079 89225089 ~ 89291341 (+) False LOC110530860
XM_021614193.2 mRNA downstream 94003 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 94047 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 156559 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 164914 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 164915 89861822 ~ 89911594 (+) True ndc1
TU863518 other upstream 37073 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 602026 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 602080 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 834592 88861079 ~ 88861828 (+) False G759598
TU863232 other upstream 834592 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 463363 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 464407 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 677180 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 700015 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 1003388 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile