RNA id: TU863620



Basic Information


Item Value
RNA id TU863620
length 217
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G759901
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89713191 ~ 89713407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctaccgccccgtcgcactcacttcagtcatcatgaagtgctttgagagaatagtaaaggatcatatcacctccaccctaccagccaccctagacccacttcagtttgcataccgccccaacaggtccgcagacgatgcaatcgccatcacactgcacactgccctatcccatctggacaacaggaatacctatgtaagaatgctgttaatttactac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863606 lncRNA upstream 21089 89691549 ~ 89692102 (+) True G759887
TU863601 lncRNA upstream 24258 89688128 ~ 89688933 (+) True G759884
TU863590 lncRNA upstream 34089 89654779 ~ 89679102 (+) False G759873
TU863589 lncRNA upstream 44939 89655160 ~ 89668252 (+) True G759873
TU863581 lncRNA upstream 74861 89637485 ~ 89638330 (+) False G759869
TU863623 lncRNA downstream 6118 89719525 ~ 89719885 (+) True G759904
TU863624 lncRNA downstream 10333 89723740 ~ 89724053 (+) True G759905
TU863625 lncRNA downstream 11405 89724812 ~ 89726287 (+) True G759906
TU863666 lncRNA downstream 60065 89773472 ~ 89774266 (+) False G759937
TU863659 lncRNA downstream 60270 89773677 ~ 89774266 (+) False G759937
XM_036986724.1 mRNA upstream 138027 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 391638 89296952 ~ 89321553 (+) True pigk
XM_036986721.1 mRNA upstream 421850 89226127 ~ 89291341 (+) True LOC110530860
XM_021614193.2 mRNA downstream 77503 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 77547 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 140059 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 148414 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 148415 89861822 ~ 89911594 (+) True ndc1
TU863611 other upstream 16284 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 53844 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 618797 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 618851 89080565 ~ 89094340 (+) False slc25a24l
TU863230 other upstream 851363 88861079 ~ 88861828 (+) False G759598
TU864640 other downstream 446863 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 447907 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 660680 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 683515 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 986888 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile