RNA id: TU863659



Basic Information


Item Value
RNA id TU863659
length 590
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G759937
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89773472 ~ 89774912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCTTTCTAATATACATTTTGACCAAGATCAAATCAGTGTGAAATTGAGTTTAAGTGAGTTATTTTTTTCTGCAAAAAATGTGGTTATTGTAAAAATAGGGTCAAACATGATTGCATACCCTCTAATTAAGGTGGGTTGGGAGAGACCTTCATGCGTCTCCTCACAACTAAGAGTTCCATTAGTCAACAAACCACTTTCCATTGCTGATTAACTTGGCATCTGAGATGAACAGACATGGATTCATTTGGCATGTGATGGGGTCAAattggggtcatgataggggctgcaccaaatgattgatgtattataataattgattatgcttatgttgtattaatagaaggggaggggttatTGGACCCCACCTCCTCTACATTTATAGGATCatagactacagattaacaatatttatatattcattataatgttttaaaattgttcCAAAGTCTTTCAGGGGAGTAGAAGAGATAAGAGTCTAGTCTGACAGACCTCTATAAATCAACTTGGGGACATTTACTGCTGAGGCCTTAGAAAACACTGGAACTATTGTATCTCTCTTGCAcgtttgtatagctgtgtatgcATGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU863625 lncRNA upstream 47390 89724812 ~ 89726287 (+) True G759906
TU863624 lncRNA upstream 49624 89723740 ~ 89724053 (+) True G759905
TU863623 lncRNA upstream 53792 89719525 ~ 89719885 (+) True G759904
TU863620 lncRNA upstream 60270 89713191 ~ 89713407 (+) True G759901
TU863606 lncRNA upstream 81575 89691549 ~ 89692102 (+) True G759887
TU863660 lncRNA downstream 270 89774536 ~ 89774912 (+) True G759937
TU863700 lncRNA downstream 22577 89796843 ~ 89814341 (+) True G759950
TU863706 lncRNA downstream 26276 89800542 ~ 89801733 (+) True G759954
TU863725 lncRNA downstream 80593 89854859 ~ 89855189 (+) True G759967
TU863728 lncRNA downstream 83193 89857459 ~ 89857740 (+) True G759970
XM_036986724.1 mRNA upstream 198513 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 452124 89296952 ~ 89321553 (+) True pigk
XM_036986721.1 mRNA upstream 482336 89226127 ~ 89291341 (+) True LOC110530860
XM_021614193.2 mRNA downstream 16644 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 16688 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 79200 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 87555 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 87556 89861822 ~ 89911594 (+) True ndc1
TU863611 other upstream 76770 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 114330 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 679283 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 679337 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 911849 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 386004 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 387048 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 599821 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 622656 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 926029 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile