RNA id: TU863660


Basic Information

Item Value
RNA id TU863660
length 377
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G759937
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89773472 ~ 89774912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCGGCATGTGAGATGAACAGACATGGATTAACTCGGCATGTGAGATGAACAGACACGGATTAACTCGGCATGTGAGATGAACAGACACGGATTAACTCGGCATGTGAGATGAACAGACACGGAGTAACTCGGCATGTGAGATGAACAGAAACACTAGCTACTGCAACTATCCAAAAGCCTCAATCTAAGACATGATCAAAAGGATTATAAAAACGCCTAGAACTGCAACAAAGAAAAATGTCTTGTTCTAGAAGCAACACTCGTCTTGTTCTAGAAGCAACACTCGTCTTGTTCTAGAAGCAACACTCGTCTTGTTCTAGAAGCAACACTCGTCTTGTTCTAGAAGCAACACTCGTCTTGTTCTAGAAGCAACAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863670 lncRNA upstream 74 89773677 ~ 89774462 (+) False G759937
TU863675 lncRNA upstream 142 89773677 ~ 89774394 (+) False G759937
TU863666 lncRNA upstream 270 89773472 ~ 89774266 (+) False G759937
TU863659 lncRNA upstream 270 89773677 ~ 89774266 (+) False G759937
TU863663 lncRNA upstream 270 89773868 ~ 89774266 (+) False G759937
TU863700 lncRNA downstream 21931 89796843 ~ 89814341 (+) True G759950
TU863706 lncRNA downstream 25630 89800542 ~ 89801733 (+) True G759954
TU863725 lncRNA downstream 79947 89854859 ~ 89855189 (+) True G759967
TU863728 lncRNA downstream 82547 89857459 ~ 89857740 (+) True G759970
TU863737 lncRNA downstream 136957 89911869 ~ 89912304 (+) True G759979
XM_036986724.1 mRNA upstream 199372 89560138 ~ 89575164 (+) False LOC118965583
XM_036986722.1 mRNA upstream 452983 89296952 ~ 89321553 (+) True pigk
XM_036986721.1 mRNA upstream 483195 89226127 ~ 89291341 (+) True LOC110530860
XM_021614193.2 mRNA downstream 15998 89790910 ~ 89837790 (+) False yipf1
XM_021614191.2 mRNA downstream 16042 89790954 ~ 89837790 (+) True yipf1
XM_021614336.2 mRNA downstream 78554 89853466 ~ 89854375 (+) True zgc:113691
XM_036986748.1 mRNA downstream 86909 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA downstream 86910 89861822 ~ 89911594 (+) True ndc1
TU863611 other upstream 77629 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 115189 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 680142 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 680196 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 912708 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 385358 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 386402 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 599175 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 622010 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 925383 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile