RNA id: TU864478


Basic Information

Item Value
RNA id TU864478
length 200
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G760491
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89914970 ~ 89915169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGTATAAATCTAGTCTAGTTAGGGGTTCCGCAGCTAAATTGGTCAAACCTTATTGTTGGTACAAAAATGCGAATTCCCTTGAGATGATATGGCCTAGGAGGGTGCAACCTTGCATGATGGTAAATGGCCGTAACAAAGCCCtcaactacagagagatgaacctggagaagagtcccctaagcaagctggtcctggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU863737 lncRNA upstream 2666 89911869 ~ 89912304 (+) True G759979
TU863728 lncRNA upstream 57230 89857459 ~ 89857740 (+) True G759970
TU863725 lncRNA upstream 59781 89854859 ~ 89855189 (+) True G759967
TU863700 lncRNA upstream 100629 89796843 ~ 89814341 (+) True G759950
TU863706 lncRNA upstream 113237 89800542 ~ 89801733 (+) True G759954
TU864487 lncRNA downstream 7891 89923060 ~ 89924400 (+) True G760498
TU864492 lncRNA downstream 33966 89949135 ~ 89949637 (+) True G760503
TU864502 lncRNA downstream 64421 89979590 ~ 89980502 (+) False G760511
TU864503 lncRNA downstream 64504 89979673 ~ 89980502 (+) True G760511
TU864505 lncRNA downstream 79305 89994474 ~ 89994710 (+) True G760513
XM_036986748.1 mRNA upstream 3376 89861821 ~ 89911594 (+) False ndc1
XM_036986747.1 mRNA upstream 3376 89861822 ~ 89911594 (+) True ndc1
XM_021614336.2 mRNA upstream 60595 89853466 ~ 89854375 (+) True zgc:113691
XM_021614193.2 mRNA upstream 77180 89790910 ~ 89837790 (+) False yipf1
XM_036986753.1 mRNA downstream 1873 89917042 ~ 89932074 (+) False best4
XM_036986755.1 mRNA downstream 3088 89918257 ~ 89932074 (+) False best4
XM_036986756.1 mRNA downstream 6266 89921435 ~ 89932074 (+) True best4
XM_036986749.1 mRNA downstream 17039 89932208 ~ 89947643 (+) False hectd3
XM_036986750.1 mRNA downstream 17039 89932208 ~ 89947643 (+) False hectd3
TU863611 other upstream 218063 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 255623 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 820576 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 820630 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 1053142 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 245101 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 246145 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 458918 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 481753 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 785126 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile