RNA id: TU864534


Basic Information

Item Value
RNA id TU864534
length 229
lncRNA type intronic
GC content 0.44
exon number 2
gene id G760539
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90062835 ~ 90063102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagaggcagagagacaggcgagagagaagagatgagcgagagagacagaaagtagAGACAACATCAGCAATGGTTTAGTTTTACAATGCAAGTGTAATTTTAGAATTTCTGTTTTTTCATAAGCCCGTTGTCTGGAGGTTGAGCTGTTTATTATCTGAATTCCCTTAGCCTTCCTGCTGCagtggatatggctgggacaatgctgggggaaaaggccttAAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864517 lncRNA upstream 22772 90039499 ~ 90040063 (+) True G760524
TU864509 lncRNA upstream 63228 89998934 ~ 89999607 (+) True G760517
TU864508 lncRNA upstream 63957 89998480 ~ 89998878 (+) True G760516
TU864507 lncRNA upstream 64474 89997947 ~ 89998361 (+) True G760515
TU864505 lncRNA upstream 68125 89994474 ~ 89994710 (+) True G760513
TU864512 lncRNA downstream 19026 90082128 ~ 90108312 (+) True st6galnac3
TU864549 lncRNA downstream 32594 90095696 ~ 90097923 (+) False G760552
TU864548 lncRNA downstream 33916 90097018 ~ 90097923 (+) True G760552
TU864674 lncRNA downstream 151453 90214555 ~ 90214853 (+) True G760652
TU864684 lncRNA downstream 160603 90223705 ~ 90223945 (+) True G760662
XM_036986759.1 mRNA upstream 71830 89975532 ~ 89991005 (+) False rabggtb
XM_036986760.1 mRNA upstream 71830 89975871 ~ 89991005 (+) False rabggtb
XM_036986758.1 mRNA upstream 71830 89976008 ~ 89991005 (+) False rabggtb
XM_036986761.1 mRNA upstream 71830 89976008 ~ 89991005 (+) True rabggtb
XM_036986757.1 mRNA upstream 88571 89967509 ~ 89974264 (+) True acadm
XM_036986765.1 mRNA downstream 165559 90228661 ~ 90295350 (+) False LOC110515626
XM_036986766.1 mRNA downstream 165559 90228661 ~ 90295350 (+) False LOC110515626
XM_036986767.1 mRNA downstream 165559 90228661 ~ 90295350 (+) False LOC110515626
XM_036986769.1 mRNA downstream 310969 90374071 ~ 90397178 (+) False LOC110530899
XM_036986770.1 mRNA downstream 310969 90374071 ~ 90397178 (+) False LOC110530899
TU863611 other upstream 365928 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 403488 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 968441 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 968495 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 1201007 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 97168 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 98212 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 310985 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 333820 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 637193 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile