RNA id: TU864549


Basic Information

Item Value
RNA id TU864549
length 244
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G760552
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90095696 ~ 90097923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaatctcatcagatactgtggaggttagctgcctggtctcaatctcatcagatactgtggaggttagctgtctggtctcattctcatcagatactgtggaggttagctgtctgggctcattcacagtagatactgtagagGTTAGCTGCATGGTCTCATtatcagtagatactgtggagtttagctgcctggtctcattctcagtagatactgtggaggttagtcgcctggtctcattctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864534 lncRNA upstream 32594 90062835 ~ 90063102 (+) True G760539
TU864517 lncRNA upstream 55633 90039499 ~ 90040063 (+) True G760524
TU864509 lncRNA upstream 96089 89998934 ~ 89999607 (+) True G760517
TU864508 lncRNA upstream 96818 89998480 ~ 89998878 (+) True G760516
TU864507 lncRNA upstream 97335 89997947 ~ 89998361 (+) True G760515
TU864674 lncRNA downstream 116632 90214555 ~ 90214853 (+) True G760652
TU864684 lncRNA downstream 125782 90223705 ~ 90223945 (+) True G760662
TU864689 lncRNA downstream 128400 90226323 ~ 90226528 (+) True G760666
TU864690 lncRNA downstream 129371 90227294 ~ 90227987 (+) True G760667
TU864719 lncRNA downstream 144475 90242398 ~ 90243806 (+) True G760681
XM_036986763.1 mRNA upstream 1079 90031024 ~ 90094617 (+) False st6galnac3
XM_036986764.1 mRNA upstream 1079 90031024 ~ 90094617 (+) False st6galnac3
XM_036986759.1 mRNA upstream 104691 89975532 ~ 89991005 (+) False rabggtb
XM_036986760.1 mRNA upstream 104691 89975871 ~ 89991005 (+) False rabggtb
XM_036986758.1 mRNA upstream 104691 89976008 ~ 89991005 (+) False rabggtb
XM_036986765.1 mRNA downstream 130738 90228661 ~ 90295350 (+) False LOC110515626
XM_036986766.1 mRNA downstream 130738 90228661 ~ 90295350 (+) False LOC110515626
XM_036986767.1 mRNA downstream 130738 90228661 ~ 90295350 (+) False LOC110515626
XM_036986769.1 mRNA downstream 276148 90374071 ~ 90397178 (+) False LOC110530899
XM_036986770.1 mRNA downstream 276148 90374071 ~ 90397178 (+) False LOC110530899
TU863611 other upstream 398789 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 436349 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 1001302 89080565 ~ 89094394 (+) True slc25a24l
TU863313 other upstream 1001356 89080565 ~ 89094340 (+) False slc25a24l
TU863232 other upstream 1233868 88861279 ~ 88861828 (+) True G759598
TU864640 other downstream 62347 90160270 ~ 90208959 (+) False G760623
TU864637 other downstream 63391 90161314 ~ 90208959 (+) True G760623
TU864778 other downstream 276164 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 298999 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 602372 90700295 ~ 90709652 (+) True LOC110530875

Expression Profile