RNA id: TU864684


Basic Information

Item Value
RNA id TU864684
length 241
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G760662
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90223705 ~ 90223945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accaacatgaacagcagctacgtttggctacataagGACTGTTAGTGGAttaacagtggcttcttccttgctgagcgacctttcaggttatgttgatataggactcgttttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggccctttgctgttgttctgggattgatttgcacttttcgcaccaaagtacgttcatctctaggagacagaacgagtctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU864674 lncRNA upstream 8852 90214555 ~ 90214853 (+) True G760652
TU864512 lncRNA upstream 115393 90082128 ~ 90108312 (+) True st6galnac3
TU864549 lncRNA upstream 125782 90095696 ~ 90097923 (+) False G760552
TU864548 lncRNA upstream 125782 90097018 ~ 90097923 (+) True G760552
TU864534 lncRNA upstream 160603 90062835 ~ 90063102 (+) True G760539
TU864689 lncRNA downstream 2378 90226323 ~ 90226528 (+) True G760666
TU864690 lncRNA downstream 3349 90227294 ~ 90227987 (+) True G760667
TU864719 lncRNA downstream 18453 90242398 ~ 90243806 (+) True G760681
TU864730 lncRNA downstream 49704 90273649 ~ 90274194 (+) True G760692
TU864722 lncRNA downstream 67071 90291016 ~ 90291696 (+) False LOC110515626
XM_036986763.1 mRNA upstream 129088 90031024 ~ 90094617 (+) False st6galnac3
XM_036986764.1 mRNA upstream 129088 90031024 ~ 90094617 (+) False st6galnac3
XM_036986760.1 mRNA upstream 232700 89975871 ~ 89991005 (+) False rabggtb
XM_036986765.1 mRNA downstream 4716 90228661 ~ 90295350 (+) False LOC110515626
XM_036986766.1 mRNA downstream 4716 90228661 ~ 90295350 (+) False LOC110515626
XM_036986767.1 mRNA downstream 4716 90228661 ~ 90295350 (+) False LOC110515626
XM_036986769.1 mRNA downstream 150126 90374071 ~ 90397178 (+) False LOC110530899
XM_036986770.1 mRNA downstream 150126 90374071 ~ 90397178 (+) False LOC110530899
TU864640 other upstream 14746 90160270 ~ 90208959 (+) False G760623
TU864637 other upstream 14746 90161314 ~ 90208959 (+) True G760623
TU863611 other upstream 526798 89696420 ~ 89696907 (+) True G759892
TU863518 other upstream 564358 89568003 ~ 89659347 (+) True LOC118965583
TU863314 other upstream 1129311 89080565 ~ 89094394 (+) True slc25a24l
TU864778 other downstream 150142 90374087 ~ 90389077 (+) False G760718
TU864805 other downstream 172977 90396922 ~ 90400472 (+) True G760718
TU864957 other downstream 476350 90700295 ~ 90709652 (+) True LOC110530875
TU864974 other downstream 513346 90737291 ~ 90743084 (+) True ndufb3
TU864981 other downstream 546172 90770117 ~ 90771037 (+) True G760857

Expression Profile